View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16252_low_4 (Length: 434)

Name: NF16252_low_4
Description: NF16252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16252_low_4
NF16252_low_4
[»] chr8 (3 HSPs)
chr8 (189-418)||(22897103-22897332)
chr8 (189-418)||(36306699-36306928)
chr8 (357-400)||(13812286-13812329)
[»] chr1 (4 HSPs)
chr1 (189-418)||(28384359-28384582)
chr1 (189-418)||(38489531-38489759)
chr1 (264-403)||(26334337-26334474)
chr1 (336-400)||(45600290-45600354)
[»] chr3 (5 HSPs)
chr3 (189-418)||(16878637-16878866)
chr3 (334-418)||(13762867-13762953)
chr3 (334-400)||(14484912-14484978)
chr3 (328-397)||(42625445-42625514)
chr3 (334-400)||(12527255-12527321)
[»] chr5 (1 HSPs)
chr5 (1-185)||(14654145-14654335)
[»] chr7 (2 HSPs)
chr7 (264-403)||(42510830-42510969)
chr7 (336-400)||(8862864-8862928)
[»] chr2 (2 HSPs)
chr2 (338-403)||(5380238-5380303)
chr2 (336-400)||(30847325-30847389)
[»] chr4 (1 HSPs)
chr4 (336-400)||(33479803-33479867)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 189 - 418
Target Start/End: Original strand, 22897103 - 22897332
Alignment:
Q  189 gatctcaaccaccttctgttcgagtgccctttttctattcaagtctggatgtcagctgatatgtggcaggatgtgcaaaatgcggccatgaattcagatt 288  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  22897103 gatctcaaccaccttctgttcgagtgcccattttctattcaagtctggatgtcagctggtatgtggcaggatgtgcaaaatgcggccatgaattcggatt 22897202  T
Q  289 cttccatcaaaacaattttctatttactccaaaactcgtctatgtatattcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatct 388  Q
    |||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22897203 cttctatcaacacaattttttatttactccaaaactcgtctatggatattcaacaacgttttgctgctatttgttggagtttatggaagcatcggaatct 22897302  T
Q  389 caaaatttgggaagaggttacggagaatag 418  Q
    ||||||||||||||||||||||||||||||    
T  22897303 caaaatttgggaagaggttacggagaatag 22897332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 189 - 418
Target Start/End: Complemental strand, 36306928 - 36306699
Alignment:
Q  189 gatctcaaccaccttctgttcgagtgccctttttctattcaagtctggatgtcagctgatatgtggcaggatgtgcaaaatgcggccatgaattcagatt 288  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |    
T  36306928 gatctcaaccaccttctgttcgagtgcccgttttctattcaagtttggatgtcagctggtatgtggcaggatgtgcaaaatgcggcaatgaattcagact 36306829  T
Q  289 cttccatcaaaacaattttctatttactccaaaactcgtctatgtatattcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatct 388  Q
    |||| ||||| | | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  36306828 cttctatcaacaaagttttctatttactccaaaactcgtctatggatattcaacaacgtttttctgctatttgttggagtttatggaagcatcggaatct 36306729  T
Q  389 caaaatttgggaagaggttacggagaatag 418  Q
    |||||||||||||||||| |||||||||||    
T  36306728 caaaatttgggaagaggtaacggagaatag 36306699  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 400
Target Start/End: Complemental strand, 13812329 - 13812286
Alignment:
Q  357 atttgttggagtttatggaagcatcgaaatctcaaaatttggga 400  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  13812329 atttgttggagtttatggaagcatcggaacctcaaaatttggga 13812286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 189 - 418
Target Start/End: Original strand, 28384359 - 28384582
Alignment:
Q  189 gatctcaaccaccttctgttcgagtgccctttttctattcaagtctggatgtcagctgatatgtggcaggatgtgcaaaatgcggccatgaattcagatt 288  Q
    ||||||||||||||||||||||||||||| |||      ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28384359 gatctcaaccaccttctgttcgagtgcccattt------caagtttggatgtcagctgatatgtggcaggatgtgcaaaatgcggccatgaattcagact 28384452  T
Q  289 cttccatcaaaacaattttctatttactccaaaactcgtctatgtatattcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatct 388  Q
    ||   ||||| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28384453 ctgttatcaacacagttctctatttactccaaaactcgtctatggatattcaacaacgttttgctgctatttgttggagtttatggaagcattgaaatct 28384552  T
Q  389 caaaatttgggaagaggttacggagaatag 418  Q
    |||||||||||||||||| |||||||||||    
T  28384553 caaaatttgggaagaggtaacggagaatag 28384582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 189 - 418
Target Start/End: Complemental strand, 38489759 - 38489531
Alignment:
Q  189 gatctcaaccaccttctgttcgagtgccctttttctattcaagtctggatgtcagctgatatgtggcaggatgtgcaaaatgcggccatgaattcagatt 288  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||| |  ||||||||||||||||||| |||||  | |    
T  38489759 gatctcaaccaccttatgttcgagtgcccgttttctattcaagtttggatgtcagctggtatgtggtat-atgtgcaaaatgcggccataaattcgaact 38489661  T
Q  289 cttccatcaaaacaattttctatttactccaaaactcgtctatgtatattcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatct 388  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  38489660 cttctatcaacacagttttctatttactccaaaactcgtctatggatattcaatcaccttttgctgctatttgttggagtttatggaagcatcgaaatct 38489561  T
Q  389 caaaatttgggaagaggttacggagaatag 418  Q
    |||||||||||||||||| |||||||||||    
T  38489560 caaaatttgggaagaggtaacggagaatag 38489531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 403
Target Start/End: Complemental strand, 26334474 - 26334337
Alignment:
Q  264 caaaatgcggccatgaattcagattcttccatcaaaacaattttctatttactccaaaactcgtctatgtatattcaacaacgttttgctgctatttgtt 363  Q
    |||||||| ||||| ||||| |||||| |  |||| ||||| ||||||||||||||||||||  ||||| || | |||||||||||||| || | ||| |    
T  26334474 caaaatgcagccataaattcggattctgctgtcaatacaatcttctatttactccaaaactcaactatgaatgtccaacaacgttttgccgcgacttgct 26334375  T
Q  364 ggagtttatggaagcatcgaaatctcaaaatttgggaaga 403  Q
    |||| |||||||||||||| ||||||  ||||||||||||    
T  26334374 ggagcttatggaagcatcggaatctc--aatttgggaaga 26334337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 400
Target Start/End: Original strand, 45600290 - 45600354
Alignment:
Q  336 attcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatctcaaaatttggga 400  Q
    ||||||||| |  |||| || ||||||||||| || |||||||||||||| ||||| ||||||||    
T  45600290 attcaacaatgcattgcagcaatttgttggagcttgtggaagcatcgaaacctcaagatttggga 45600354  T

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Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 189 - 418
Target Start/End: Complemental strand, 16878866 - 16878637
Alignment:
Q  189 gatctcaaccaccttctgttcgagtgccctttttctattcaagtctggatgtcagctgatatgtggcaggatgtgcaaaatgcggccatgaattcagatt 288  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| || |    
T  16878866 gatctcaaccaccatctattcgagtgcccgttttctattcaagtttggatgtcagctggtatgtggcaggatgtgcaaaatgcggccatgaattcggact 16878767  T
Q  289 cttccatcaaaacaattttctatttactccaaaactcgtctatgtatattcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatct 388  Q
    || |  |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||  |||||    
T  16878766 ctgctgtcaacacagttttctatttactccaaaactcgtctatggatattcaacaacgttttgctgctatttgttggagtttacagaagcatcagaatct 16878667  T
Q  389 caaaatttgggaagaggttacggagaatag 418  Q
    |||||||||||||||||| |||||||||||    
T  16878666 caaaatttgggaagaggtaacggagaatag 16878637  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 418
Target Start/End: Original strand, 13762867 - 13762953
Alignment:
Q  334 atattcaacaacgttttgctgctat--ttgttggagtttatggaagcatcgaaatctcaaaatttgggaagaggttacggagaatag 418  Q
    |||||||||| |||||||| |||||  |||||||||||| ||||||||||| || || ||||| |||||||| || |||||||||||    
T  13762867 atattcaacaccgttttgccgctatatttgttggagtttgtggaagcatcggaaccttaaaatatgggaagatgtaacggagaatag 13762953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 14484912 - 14484978
Alignment:
Q  334 atattcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatctcaaaatttggga 400  Q
    ||||| ||||||| |||||||||| |||||||||||| |||||||| || || || |||||||||||    
T  14484912 atattaaacaacgctttgctgctacttgttggagtttgtggaagcaccggaaccttaaaatttggga 14484978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 397
Target Start/End: Original strand, 42625445 - 42625514
Alignment:
Q  328 ctatgtatattcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatctcaaaatttg 397  Q
    ||||| ||||| |||||||  |||||||||||| || |||||||||||||||||| || || ||||||||    
T  42625445 ctatgaatattaaacaacgagttgctgctattttttagagtttatggaagcatcggaacctaaaaatttg 42625514  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 400
Target Start/End: Complemental strand, 12527321 - 12527255
Alignment:
Q  334 atattcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatctcaaaatttggga 400  Q
    ||||| |||||||  ||||||||||||  | |||||||||||||||||| || || |||||||||||    
T  12527321 atattaaacaacgagttgctgctattttcttgagtttatggaagcatcggaacctaaaaatttggga 12527255  T

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Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 14654335 - 14654145
Alignment:
Q  1 tttccgagattcctccaaggtgcaaattcaaggatgatgctcacaaataaaaaatctttagtaaacatttaaaatct-------ttcgtgaaattcacat 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||  | | |       ||||||||||||||||    
T  14654335 tttccgagattcctccaaggtgcaaattcaaggatgatgctcacaaataaaaaatcttcagtaat-attttgagtttggggcaattcgtgaaattcacat 14654237  T
Q  94 gaaagattgttacttatggtttcgagatcaatattctaatttgatcgtcaatatgtctatgttaaagaatataatgatcatcttgaacatca 185  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  14654236 gaaagattgttacttgtggtttcgagatcaatattctaatttgatcgtcaatatgtccatgttaaagaatataatgatcatcttaaacatca 14654145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 403
Target Start/End: Complemental strand, 42510969 - 42510830
Alignment:
Q  264 caaaatgcggccatgaattcagattcttccatcaaaacaattttctatttactccaaaactcgtctatgtatattcaacaacgttttgctgctatttgtt 363  Q
    |||||||| || || ||||| |||||| |  |||| ||||| ||||||||||||||||||||   |||| || | ||||| ||||||||||| | ||| |    
T  42510969 caaaatgcagcaataaattcggattctgctgtcaatacaatcttctatttactccaaaactcaaatatgaatgtccaacagcgttttgctgcgacttgct 42510870  T
Q  364 ggagtttatggaagcatcgaaatctcaaaatttgggaaga 403  Q
    |||| || ||||||||||| ||||||||||||||||||||    
T  42510869 ggagcttgtggaagcatcggaatctcaaaatttgggaaga 42510830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 8862928 - 8862864
Alignment:
Q  336 attcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatctcaaaatttggga 400  Q
    |||||||||||  |||| || ||||||||||| || |||||||||||||| ||||| ||||||||    
T  8862928 attcaacaacgcattgcagcaatttgttggagcttgtggaagcatcgaaacctcaagatttggga 8862864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 5380238 - 5380303
Alignment:
Q  338 tcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatctcaaaatttgggaaga 403  Q
    |||||||||||||| |||  |||||||||||||||||||||| || ||||| ||| | ||||||||    
T  5380238 tcaacaacgttttgttgcactttgttggagtttatggaagcaccgtaatctgaaagtatgggaaga 5380303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 30847389 - 30847325
Alignment:
Q  336 attcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatctcaaaatttggga 400  Q
    |||||||||||  |||| || ||||||||||| || |||||||||||||| ||||  ||||||||    
T  30847389 attcaacaacgcattgcagcaatttgttggagcttgtggaagcatcgaaacctcatgatttggga 30847325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 400
Target Start/End: Original strand, 33479803 - 33479867
Alignment:
Q  336 attcaacaacgttttgctgctatttgttggagtttatggaagcatcgaaatctcaaaatttggga 400  Q
    |||||||||||| |||||   |||||||||||||| ||||||||||  || ||||||||||||||    
T  33479803 attcaacaacgtgttgctataatttgttggagtttgtggaagcatcagaacctcaaaatttggga 33479867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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