View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16253_high_1 (Length: 546)
Name: NF16253_high_1
Description: NF16253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16253_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 102 - 537
Target Start/End: Original strand, 17662298 - 17662721
Alignment:
| Q |
102 |
gagaataagggagtgatgaaaataaactaaaggtaagaaagttgaagtttgatgaaagaaagagaaagtaagataaaccctagctatttcttcggaaaag |
201 |
Q |
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| T |
17662298 |
gagaataagggagtgatgaaaataaactaaaggtaacaaagttgaagtttgatgaaagaaagagaaagtaagataaaccctagctatttcttcggaaaag |
17662397 |
T |
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| Q |
202 |
ccctaactattaatttataaacttcgcgcgttctctttgctgtttcacaaccacgctttccatcgctttgttgcttcaaaccctattttctcagttcaat |
301 |
Q |
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| T |
17662398 |
tcctaactattactttataaacctcgcgcgttctctttcctgcttcacatccacgctttccatcgctttgttgcttcaaaccctattttcacagttcaat |
17662497 |
T |
|
| Q |
302 |
tccactgctacatcgatcacaacatcatcatgatgagttctttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaacta |
401 |
Q |
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| T |
17662498 |
tcctctgctacatcgatcacaacatcatcatgatgagttctttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaacta |
17662597 |
T |
|
| Q |
402 |
tgaat---atcatgatactgaaattcagaaacaacaaggttcaaacccta-agttcaaaccctatagnnnnnnngtacactctcctgagccaaacactca |
497 |
Q |
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| T |
17662598 |
tgaatatcatcatggtactgaaattcaga---aacaaggttcaaaccctatagtt-------------ttttttgtacactctcctgagccaaacactca |
17662681 |
T |
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| Q |
498 |
caacatcatgaacaaaccctatgctgcaccttcatctcac |
537 |
Q |
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| T |
17662682 |
caacatcatgaacaaaccctattcttcaccttcttctcac |
17662721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 102 - 537
Target Start/End: Complemental strand, 17701784 - 17701358
Alignment:
| Q |
102 |
gagaataagggagtgatgaaaataaactaaaggtaagaaagttgaagtttgatgaaagaaagagaaagtaagataaaccctagctatttcttcggaaaag |
201 |
Q |
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||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
17701784 |
gagaataagggagtgatgaaaataaaccaacggtgacaaagttgaagtttgatgaaagaaagataaattaagataaaccctagctatttcttcggaaaa- |
17701686 |
T |
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| Q |
202 |
ccctaactattaatttataaacttcgcgcgttctctttgctgtttcacaaccacgctttccatcgctttgttgcttcaaaccctattttctcagttcaat |
301 |
Q |
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| T |
17701685 |
ccctagctattgctttataaacctcgcgcgatctgtttggtgcttcacatccacgctttccatcgctttgtttcttcaaaccctattttctcagttcaat |
17701586 |
T |
|
| Q |
302 |
tccactgctacatcgatcacaacatcatcatgatgagttctttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaacta |
401 |
Q |
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| T |
17701585 |
tccactgctacatcg-----------atcatgaagagttctttttcttcaccctatttccattttcatcattcaatcgatcacaaacccaaaaacaacta |
17701497 |
T |
|
| Q |
402 |
tgaat---atcatgatactgaaattcagaaacaacaaggttcaaaccctaagttcaaaccctatagnnnnnnngtacactctcctgagccaaacactcac |
498 |
Q |
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||||| |||||| || ||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |
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| T |
17701496 |
tgaatatcatcatggtaatgaaattgagaaacaccaagattcaaaccctaagttcaaaccctatagtttttctgtacactctcctgagcaaatcactcac |
17701397 |
T |
|
| Q |
499 |
aacatcatgaacaaaccctatgctgcaccttcatctcac |
537 |
Q |
| |
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|||||||||||||||| |||| || ||||||| |||||| |
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| T |
17701396 |
aacatcatgaacaaacactattcttcaccttcttctcac |
17701358 |
T |
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