View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16254_high_1 (Length: 298)
Name: NF16254_high_1
Description: NF16254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16254_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 38748233 - 38747959
Alignment:
| Q |
1 |
atacttgtgaattcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaactgaagcatgcaaagatggtaaaaactgtaagagaaaagt |
100 |
Q |
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| T |
38748233 |
atacttgtgaattcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaactgaagcatgcaaagatggtaaaaactgtaagagaaaagt |
38748134 |
T |
|
| Q |
101 |
ttgtttctttgcacacactcctcgtcaattaagaatccttccaattacatcatcttctccatcttcaaatgaacatttttcatgcaacaagaaaaataac |
200 |
Q |
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| T |
38748133 |
ttgtttctttgcacacactcctcgtcaattaagaatccttccagttacatcat---------cttcaaatgaacatttttcatgcaacaagaaaaataac |
38748043 |
T |
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| Q |
201 |
aagcttttgaataaccatgttgcttcaaaatcaaacaattgttgtttgttttgtcactgtggtggtaatggtaatggtaatggt |
284 |
Q |
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| T |
38748042 |
aagcttttgaataaccatgttgcttcaaaatcaaacaattgttgtttgttttgtcactgtggtggtaatggtaacggtaatggt |
38747959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 30385708 - 30385830
Alignment:
| Q |
6 |
tgtgaattcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaactgaagcatgcaaagatggtaaaaactgtaagagaaaagtttgtt |
105 |
Q |
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| T |
30385708 |
tgtgaattctcccacggagtttttgagtgctggttgcacccttcaaggtatagaactgaagcttgtaaagatggtaaaaattgtaagcgaaaaatttgtt |
30385807 |
T |
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| Q |
106 |
tctttgcacacactcctcgtcaa |
128 |
Q |
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| T |
30385808 |
tttttgctcatacacctcgtcaa |
30385830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 47893962 - 47894012
Alignment:
| Q |
12 |
ttcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaact |
62 |
Q |
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| T |
47893962 |
ttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaact |
47894012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 33648018 - 33648054
Alignment:
| Q |
25 |
tttttgaatgctggcttcatcctgctagatacagaac |
61 |
Q |
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| T |
33648018 |
tttttgaatgctggcttcatcctgctcaatacagaac |
33648054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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