View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16254_high_1_N (Length: 652)

Name: NF16254_high_1_N
Description: NF16254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16254_high_1_N
NF16254_high_1_N
[»] chr3 (6 HSPs)
chr3 (28-652)||(51120656-51121278)
chr3 (264-438)||(51113780-51113954)
chr3 (199-440)||(13470666-13470907)
chr3 (199-448)||(51764374-51764623)
chr3 (285-352)||(27005792-27005859)
chr3 (269-323)||(1657292-1657346)
[»] chr8 (9 HSPs)
chr8 (264-441)||(18315272-18315449)
chr8 (267-447)||(27922425-27922605)
chr8 (198-372)||(34936096-34936270)
chr8 (266-446)||(17636402-17636581)
chr8 (247-476)||(21235446-21235675)
chr8 (264-372)||(32151293-32151401)
chr8 (185-377)||(28246215-28246405)
chr8 (286-327)||(17628035-17628076)
chr8 (267-322)||(17643598-17643653)
[»] chr4 (34 HSPs)
chr4 (264-455)||(546822-547013)
chr4 (247-476)||(570239-570468)
chr4 (198-372)||(553471-553645)
chr4 (262-372)||(1524483-1524593)
chr4 (199-372)||(3438500-3438672)
chr4 (265-376)||(8187091-8187202)
chr4 (264-376)||(1548423-1548535)
chr4 (266-441)||(12121458-12121633)
chr4 (265-372)||(1513407-1513514)
chr4 (266-369)||(8184031-8184134)
chr4 (199-460)||(7225817-7226078)
chr4 (261-372)||(1537763-1537874)
chr4 (206-441)||(55908669-55908904)
chr4 (295-372)||(1508033-1508110)
chr4 (267-371)||(7307853-7307957)
chr4 (265-460)||(1489361-1489556)
chr4 (199-330)||(1600453-1600584)
chr4 (246-367)||(532186-532307)
chr4 (266-326)||(1519143-1519203)
chr4 (267-358)||(1545779-1545870)
chr4 (264-371)||(1552766-1552873)
chr4 (199-373)||(53761706-53761878)
chr4 (320-461)||(558401-558542)
chr4 (199-436)||(640843-641080)
chr4 (200-337)||(659736-659873)
chr4 (266-330)||(12116576-12116640)
chr4 (395-441)||(553402-553448)
chr4 (395-460)||(55505235-55505300)
chr4 (292-376)||(55505135-55505219)
chr4 (406-453)||(644742-644789)
chr4 (409-483)||(1545654-1545728)
chr4 (318-376)||(12123423-12123481)
chr4 (314-371)||(566182-566239)
chr4 (409-441)||(53761913-53761945)
[»] chr6 (27 HSPs)
chr6 (244-448)||(6394780-6394984)
chr6 (199-447)||(6432078-6432326)
chr6 (199-369)||(6402855-6403025)
chr6 (199-447)||(7119074-7119322)
chr6 (199-448)||(6594540-6594789)
chr6 (199-447)||(7131552-7131800)
chr6 (185-357)||(6585157-6585329)
chr6 (252-356)||(12102274-12102378)
chr6 (262-372)||(6409998-6410108)
chr6 (243-440)||(14820617-14820814)
chr6 (185-377)||(11936195-11936387)
chr6 (185-377)||(11948175-11948367)
chr6 (267-448)||(6423133-6423314)
chr6 (262-440)||(14818306-14818484)
chr6 (262-441)||(6415889-6416068)
chr6 (293-447)||(6603230-6603384)
chr6 (185-372)||(7994102-7994289)
chr6 (263-372)||(9411347-9411456)
chr6 (292-372)||(19632431-19632511)
chr6 (264-439)||(6589322-6589497)
chr6 (271-369)||(14802331-14802429)
chr6 (290-369)||(10579761-10579840)
chr6 (267-330)||(28935083-28935146)
chr6 (244-374)||(6426501-6426631)
chr6 (404-441)||(28934972-28935009)
chr6 (409-437)||(7994326-7994354)
chr6 (409-441)||(10579881-10579913)
[»] chr5 (9 HSPs)
chr5 (200-377)||(32267462-32267636)
chr5 (199-376)||(41889488-41889665)
chr5 (272-447)||(41901542-41901717)
chr5 (272-372)||(37937879-37937979)
chr5 (271-369)||(38267562-38267660)
chr5 (290-372)||(20478107-20478189)
chr5 (395-436)||(17205527-17205568)
chr5 (406-448)||(20478223-20478265)
chr5 (322-375)||(12845582-12845635)
[»] chr2 (3 HSPs)
chr2 (198-483)||(45245018-45245303)
chr2 (199-441)||(1037598-1037840)
chr2 (266-369)||(32785773-32785876)
[»] chr7 (3 HSPs)
chr7 (199-465)||(15092085-15092351)
chr7 (185-327)||(7977615-7977757)
chr7 (199-448)||(10614509-10614758)
[»] chr1 (5 HSPs)
chr1 (244-448)||(19468478-19468682)
chr1 (267-363)||(52082582-52082678)
chr1 (298-437)||(7554415-7554554)
chr1 (346-461)||(29719004-29719119)
chr1 (267-365)||(52092776-52092874)
[»] scaffold0295 (1 HSPs)
scaffold0295 (244-365)||(603-724)
[»] scaffold0041 (1 HSPs)
scaffold0041 (292-371)||(39177-39256)


Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 28 - 652
Target Start/End: Original strand, 51120656 - 51121278
Alignment:
Q  28 aatggattgcgcgctttctctcaaaatgttacaactttgacttcactcacttttttcaacgtaaattatattgatcgcaatgactttttcctcatcgccg 127  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120656 aatggattgcgagctttctctcaaaatgttacaactttgacttcactcacttttttcaacgtaaattatattgatcgcaatgactttttcctcatcgccg 51120755  T
Q  128 attgttttcccgatttgcagtcgcttggttttaagtaccgccatggaatatgtaacaaaggtattggttgtgttttatggagatgttgtaacattagaca 227  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120756 attgttttcccgatttgcagtcgcttggttttaagtactgccatggaatatgtaacaaaggtattggttgtgttttatggagatgttgtaacattagaca 51120855  T
Q  228 cttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgat 327  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120856 cttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgat 51120955  T
Q  328 gaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtag 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120956 gaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtag 51121055  T
Q  428 aaaactgcacacaattgagagtgatcaacttgaggtattgctataaagtccatgctgatattcttcgacatccgtagtcttttcaaggtcatcgttgaga 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||   | ||  ||||||||||||||||||||||||||    
T  51121056 aaaactgcacacaattgagagtgatcaacttgaggtattgctataaagtccatgctgattttgtt--gcctcaatagtcttttcaaggtcatcgttgaga 51121153  T
Q  528 aagatatttgttcctttcccttatcatttcaaagatagagagagggaactctttttgcgtcatcatggaagtcttgtttgctagcattctgaggctgctc 627  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  51121154 aagatatttgttcctttctcttatcatttcaaagatagagagagggaactcttttcgcgtcatcatggttgtcttgtttgctagcattctgaggctgctc 51121253  T
Q  628 tgtggaagtttgaacttttgaaatg 652  Q
    |||||||||||||||||||||||||    
T  51121254 tgtggaagtttgaacttttgaaatg 51121278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 264 - 438
Target Start/End: Original strand, 51113780 - 51113954
Alignment:
Q  264 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 363  Q
    ||||||||||||||||| || |||| ||||||||||  |||||||  ||||||  ||||||||||||| ||| ||||| ||||| ||||||||| |||||    
T  51113780 tggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtggg 51113879  T
Q  364 cttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcaca 438  Q
    ||||||||| |||  ||  |||  ||||   |||||||| | || |||||||| |||||||||||||| ||||||    
T  51113880 cttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcaca 51113954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 199 - 440
Target Start/End: Original strand, 13470666 - 13470907
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||| ||||||||| ||||| || ||||||||  ||  ||||  || |||||| |  | ||||||||||||||  |||| |||  |||||||||    
T  13470666 gttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgt 13470765  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgt 398  Q
    ||||||||||  ||||||  ||| ||||| ||| ||| ||| | |||||||||| |||| |||||||||||||| | |  || |||   |||    ||||    
T  13470766 tgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttgaactttgtcataatgt 13470865  T
Q  399 cacacaaaaaggagtgaaacatgtggtagaaaactgcacaca 440  Q
    |||| || | |||||||||||||||||||| |||||||||||    
T  13470866 cacagaagagggagtgaaacatgtggtagagaactgcacaca 13470907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 199 - 448
Target Start/End: Original strand, 51764374 - 51764623
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||||||||| ||| ||||| || |||||| |  |||  |||||||||||||| |  | |||||||||||||| |||||  ||  |||||||||    
T  51764374 gttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggaggtgt 51764473  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgt 398  Q
    |  |||||||   ||||| |||||||||| ||| ||| ||||  |||||||||| |||| | |||||||||||| | |  || |||   |||    ||||    
T  51764474 tagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacattgtgataatgt 51764573  T
Q  399 cacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagag 448  Q
    ||   | || ||||||||||||||||| ||||||||||||||||||||||    
T  51764574 caaggagaagggagtgaaacatgtggttgaaaactgcacacaattgagag 51764623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 27005792 - 27005859
Alignment:
Q  285 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaaga 352  Q
    |||| ||||||| ||||||||||| ||||||||| ||||| ||  || ||| ||||||||||||||||    
T  27005792 caaactggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaaaga 27005859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 1657346 - 1657292
Alignment:
Q  269 tgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttga 323  Q
    ||||||||||||||| |||| ||||||||||| |||||||   ||||||||||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 1657292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 264 - 441
Target Start/End: Original strand, 18315272 - 18315449
Alignment:
Q  264 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 363  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||| ||||||| |||||||||||||  ||| ||||| |||||||||||||||||| ||    
T  18315272 tggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtagg 18315371  T
Q  364 cttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaa 441  Q
    ||||||||| |||   | ||| ||||||   |||||||| | |||||||  ||  |||||||||||||||||||||||    
T  18315372 cttttgcaactgttattggaacgctgttgtgatgtcacagagaaaggagaaaagtatgtggtagaaaactgcacacaa 18315449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 267 - 447
Target Start/End: Complemental strand, 27922605 - 27922425
Alignment:
Q  267 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggctt 366  Q
    ||||||||||||||||| ||||||||||||||||||||||||  ||||||  ||||||||||||  ||| ||| | ||||||||||||||| ||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctt 27922506  T
Q  367 ttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgaga 447  Q
    ||| ||||||| || ||||  |||    || ||||| | || |||||||| |||||||||||||||||||| ||| |||||    
T  27922505 ttgaaattgtcacttgaaaattgtaatgatttcacaaagaagggagtgaaccatgtggtagaaaactgcactcaactgaga 27922425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 198 - 372
Target Start/End: Original strand, 34936096 - 34936270
Alignment:
Q  198 tgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtg 297  Q
    ||||||| ||||||||||| |||||||||| ||| ||||| ||| |||||||| |||||| |  ||  |||||| |||||| ||||  ||| | ||||||    
T  34936096 tgttttaaggagatgttgtgacattagacatttgtacttggccgattgttcaaaagtgaaccttcacagaatgatctttgatgttccaaaactagaggtg 34936195  T
Q  298 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 372  Q
    ||| |||||||  ||||||||||||||||| ||| ||| ||||  ||| ||||||||||||||||||||||||||    
T  34936196 ttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgcaa 34936270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 266 - 446
Target Start/End: Original strand, 17636402 - 17636581
Alignment:
Q  266 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 365  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||| ||||||  | | ||||| |||||||||||||||| | | ||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgtcttagact 17636501  T
Q  366 tttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgag 446  Q
    |||||||||||| || |||   ||| |  |||||||  | ||||||||||  |||||| ||||||| ||||||||||||||    
T  17636502 tttgcaattgtcacttgaatattgtgttaatgtcac-gagaaaggagtgaggcatgtgctagaaaattgcacacaattgag 17636581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 247 - 476
Target Start/End: Complemental strand, 21235675 - 21235446
Alignment:
Q  247 tcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatct 346  Q
    |||| |||||||| |  |||| ||||||||||||||| |||| |||||||||||||||||||  ||||| |||||||| | ||| |||| ||| | || |    
T  21235675 tcaaaagtgaaactgtgtggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgattt 21235576  T
Q  347 caaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgag 446  Q
    ||||||| |||||  ||||||||||| |||  || ||    ||||  ||||||||  ||| ||| ||||| |||||||||||||||||||||||| ||||    
T  21235575 caaagagctgtcgcaggcttttgcaactgttacttgagcattgttattatgtcactaaaagaggcgtgaatcatgtggtagaaaactgcacacaactgag 21235476  T
Q  447 agtgatcaacttgaggtattgctataaagt 476  Q
     | |||||| |||| | | |||||||||||    
T  21235475 ggagatcaatttgaagaactgctataaagt 21235446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 264 - 372
Target Start/End: Complemental strand, 32151401 - 32151293
Alignment:
Q  264 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 363  Q
    |||||||||||| ||||||  |||  |||||||||| ||||||||   ||||||  |||||||||||| ||| ||||| ||||||||||||||| |||||    
T  32151401 tggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtggg 32151302  T
Q  364 cttttgcaa 372  Q
    |||||||||    
T  32151301 cttttgcaa 32151293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 185 - 377
Target Start/End: Original strand, 28246215 - 28246405
Alignment:
Q  185 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 284  Q
    ||||||||| |  |||||||  || |||||||||||||||||| ||||| || ||  ||||||||||| |||| |  |||  | |||||||||||||||     
T  28246215 aaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgttgttcaagactgaagctacatacattgaactttgaagttcc 28246314  T
Q  285 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtc 377  Q
    |||| ||||||||||| |||||||   ||||||||||||  || ||  ||| |||   ||||||||||||||| | |||||||||||| ||||    
T  28246315 caaactggaggtgttggacttgtcatttacaagagttga--ataaatcactctattggatctcaaagagttgtagcgggcttttgcaactgtc 28246405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 17628035 - 17628076
Alignment:
Q  286 aaattggaggtgttgaacttgtcgcatacaagagttgatgat 327  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  17628035 aaattggaggtgttgaacttgtcacatactagagttgatgat 17628076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 17643598 - 17643653
Alignment:
Q  267 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttg 322  Q
    ||||||| ||| ||||| ||||||||||| |||||||||||| || ||||||||||    
T  17643598 aatgaacgttggagttcccaaattggaggcgttgaacttgtcacaaacaagagttg 17643653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 264 - 455
Target Start/End: Complemental strand, 547013 - 546822
Alignment:
Q  264 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 363  Q
    ||||||||||||||||||||  |||||||||||| |||||||||| | |||||  ||  ||||||||| ||| ||||| ||||||||||||||| |||||    
T  547013 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 546914  T
Q  364 cttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaa 455  Q
    |||||| ||||||  || |||   |||||  |||||||| | || ||||||||||||||| |||||||||||||| || | |||| ||||||    
T  546913 cttttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaa 546822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 247 - 476
Target Start/End: Complemental strand, 570468 - 570239
Alignment:
Q  247 tcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatct 346  Q
    |||| |||||||| || |||| |||||||||||||||||||| | |||||||||||||||||  ||||| |||||||| | ||| |||| ||| | || |    
T  570468 tcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgattt 570369  T
Q  347 caaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgag 446  Q
    ||||||||||||| |||||||||||| |||  || ||    ||||  ||||| ||  ||| ||| ||||| |||||||||||||||||||||||| ||||    
T  570368 caaagagttgtcgcgggcttttgcaactgttacttgagcattgttattatgttactaaaagaggcgtgaatcatgtggtagaaaactgcacacaactgag 570269  T
Q  447 agtgatcaacttgaggtattgctataaagt 476  Q
     | |||||| |||| | | |||||||||||    
T  570268 ggagatcaatttgaagaactgctataaagt 570239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 198 - 372
Target Start/End: Complemental strand, 553645 - 553471
Alignment:
Q  198 tgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtg 297  Q
    ||||||| ||| |||||||||||||||||| |||||||| ||| | ||||||||||||||    | |  | |||||||| ||||||||||| ||||||||    
T  553645 tgttttaaggacatgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtg 553546  T
Q  298 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 372  Q
    |||||||||||   |||||||||||||||||||  |||  |||| || ||||||||||||  |||||||||||||    
T  553545 ttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaa 553471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 262 - 372
Target Start/End: Original strand, 1524483 - 1524593
Alignment:
Q  262 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtg 361  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||| | |||||| ||||||||||||| ||| ||| | |||||| ||||||||||||    
T  1524483 catggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtg 1524582  T
Q  362 ggcttttgcaa 372  Q
    |||||||||||    
T  1524583 ggcttttgcaa 1524593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 199 - 372
Target Start/End: Original strand, 3438500 - 3438672
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||||||||||||| |||||||| ||||||||  | ||||||| | |||||||   |  || |||||||||||| |||   ||||||||||| |    
T  3438500 gttttaaggagatgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgtgtgcaatgaactttgatgtttcaaaattggaggtat 3438599  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 372  Q
    ||| |||||| |||||||||||||||||| ||| |||  |||||||||||||||||||| ||||||||||||||    
T  3438600 tgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtgggcttttgcaa 3438672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 265 - 376
Target Start/End: Original strand, 8187091 - 8187202
Alignment:
Q  265 ggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggc 364  Q
    ||||||||||||||| ||  |||| ||||||||||||||||||| |||||||||||||||||| ||| ||| |||| ||| |||||||||||| ||||||    
T  8187091 ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggc 8187190  T
Q  365 ttttgcaattgt 376  Q
    ||||||| ||||    
T  8187191 ttttgcagttgt 8187202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 264 - 376
Target Start/End: Original strand, 1548423 - 1548535
Alignment:
Q  264 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 363  Q
    |||| ||||||||||| ||| |||| ||||||||||||||||||| ||||||||  |||||||||||| |||  |||| ||||||||||||||| |||||    
T  1548423 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 1548522  T
Q  364 cttttgcaattgt 376  Q
    |||||||| ||||    
T  1548523 cttttgcacttgt 1548535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 266 - 441
Target Start/End: Original strand, 12121458 - 12121633
Alignment:
Q  266 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 365  Q
    |||||||||||||||||| |||| | || ||||||||||||||  ||||||  ||||||||||||| ||| |  |||||||||||| |||| ||||||||    
T  12121458 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 12121557  T
Q  366 tttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaa 441  Q
    ||||||| | || || ||| | || || | ||||||| | |  |||||||| |||||||||||||| |||||||||    
T  12121558 tttgcaactctcactggaatggtgcttttttgtcacagagatgggagtgaagcatgtggtagaaaaatgcacacaa 12121633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 265 - 372
Target Start/End: Original strand, 1513407 - 1513514
Alignment:
Q  265 ggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggc 364  Q
    ||||||||||||||||||| |||| | || ||||||||||||||   |||||  ||||||||||||| ||| || |||||||||||| ||||||||||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggc 1513506  T
Q  365 ttttgcaa 372  Q
    ||||||||    
T  1513507 ttttgcaa 1513514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 266 - 369
Target Start/End: Original strand, 8184031 - 8184134
Alignment:
Q  266 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 365  Q
    ||||||||||||||||||  ||| | ||||||||||||||||| ||||||||||||||||||  |  ||| |||| |||||||||||||||| |||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggct 8184130  T
Q  366 tttg 369  Q
    ||||    
T  8184131 tttg 8184134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 199 - 460
Target Start/End: Original strand, 7225817 - 7226078
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||||||||||||| |||||||| ||||||||  ||   ||| |||||||||| |  |     |||||||||||||||||| |||||||||| |    
T  7225817 gttttacggagatgttgtaagattagacatttgaacttatcctactgtccaagagtgaagctacgcaacatgaactttgaagttctcgaattggaggtct 7225916  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgt 398  Q
    |||||||||| |||||||||||||||||  ||  |||   ||| || |||||||||||| |||| ||||||||| | |  || ||||| |||||  | ||    
T  7225917 tgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttttgcaactattactggaaagttgttttgaggt 7226016  T
Q  399 cacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttga 460  Q
    |||  | || ||| |||| || ||||||||||||||||  ||| |||||| |||||| ||||    
T  7226017 caccgagaagggattgaagcacgtggtagaaaactgcaagcaactgagagagatcaatttga 7226078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 1537763 - 1537874
Alignment:
Q  261 gcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgt 360  Q
    ||||||||||||||||||||||| |||| | || ||||||||||||||  ||||||  ||| ||||  ||| ||| | ||||||||||||| ||||||||    
T  1537763 gcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgt 1537862  T
Q  361 gggcttttgcaa 372  Q
    ||||||||||||    
T  1537863 gggcttttgcaa 1537874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 206 - 441
Target Start/End: Original strand, 55908669 - 55908904
Alignment:
Q  206 ggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaactt 305  Q
    |||||||||||||  ||||||| ||||| ||  ||   ||||||||||||||||  | | |||| |||||| ||||||   |||| |||||||| |||||    
T  55908669 ggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaactt 55908768  T
Q  306 gtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaa 405  Q
    ||| |||||| | ||||||||||||| ||| ||| | |||||||||| |||| |||||||||| ||| ||| ||| ||||  |||    | |||||| |     
T  55908769 gtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagag 55908868  T
Q  406 aaaggagtgaaacatgtggtagaaaactgcacacaa 441  Q
    || || ||||||||||| || |||||||||||||||    
T  55908869 aatggtgtgaaacatgtagtcgaaaactgcacacaa 55908904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 295 - 372
Target Start/End: Original strand, 1508033 - 1508110
Alignment:
Q  295 gtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 372  Q
    |||||||||||||| ||||| |  ||||||||||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  1508033 gtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaa 1508110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 7307957 - 7307853
Alignment:
Q  267 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggctt 366  Q
    |||||||||| |||||| |||||||||||| |||||||||||  |||||  |||||||||||||  ||||  | | ||||||||||||||| || |||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctt 7307858  T
Q  367 ttgca 371  Q
    |||||    
T  7307857 ttgca 7307853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 460
Target Start/End: Original strand, 1489361 - 1489556
Alignment:
Q  265 ggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggc 364  Q
    ||||||||||||||||||| |||| | || ||||||||||||||  ||||||  ||| |  | |||| ||| | ||||||||||| | |||| |||||||    
T  1489361 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacaacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 1489460  T
Q  365 ttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttga 460  Q
    |||||||| | |  || ||| | |||||  |||||||| | || |||||||| |||||| ||||||| ||| ||||| | |||| |||||| ||||    
T  1489461 ttttgcaactcttactggaagggtgttttaatgtcacagagaagggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttga 1489556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 199 - 330
Target Start/End: Complemental strand, 1600584 - 1600453
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| |||||| || ||| |||||||| ||||||||  ||   ||||||| | |||| | ||  |||||||||||||||||||| ||| |||||||||    
T  1600584 gttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgt 1600485  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaa 330  Q
    ||||||||||  ||||||| ||||| ||||||    
T  1600484 tgaacttgtcatatacaagggttgacgatgaa 1600453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 246 - 367
Target Start/End: Complemental strand, 532307 - 532186
Alignment:
Q  246 ttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatc 345  Q
    |||||||||||| |  | |||||||||||||||||| | |||  | |||||||||||||||||  ||||||   ||||||||||||| || ||||| | |    
T  532307 ttcaagagtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacc 532208  T
Q  346 tcaaagagttgtcgtgggcttt 367  Q
    ||||||| |||||||| |||||    
T  532207 tcaaagaattgtcgtgagcttt 532186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 1519143 - 1519203
Alignment:
Q  266 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatga 326  Q
    |||||||||||||||||| |||| | ||||||||||||||||| |||||||| ||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatga 1519203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 358
Target Start/End: Complemental strand, 1545870 - 1545779
Alignment:
Q  267 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtc 358  Q
    |||||||||| ||||||  ||| |||||||||||||||||| |  |||||||||||||||||||| ||| ||| ||||  |||||| |||||    
T  1545870 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttatataataacaaagaattgtc 1545779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 371
Target Start/End: Original strand, 1552766 - 1552873
Alignment:
Q  264 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 363  Q
    |||| ||||||||||| ||| |||| |||| |||||||| ||||| |||||||   || ||||||||| |||  |||| || ||||||| ||||||||||    
T  1552766 tggactgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtggg 1552865  T
Q  364 cttttgca 371  Q
    ||||||||    
T  1552866 cttttgca 1552873  T

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Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 373
Target Start/End: Original strand, 53761706 - 53761878
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||||||||||||||||||| || ||||||||  |||  |||||||||||||| |    |||||||||||||| ||||| |||  | |||| ||    
T  53761706 gttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcccaagctagaggcgt 53761805  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaat 373  Q
    ||||||||||   ||| | |||| | |||  |||||  | ||| ||||| |||| ||||||||||||||||||||    
T  53761806 tgaacttgtcatttacgaaagttaacgat--aaaacactctgtgatctcgaagaattgtcgtgggcttttgcaat 53761878  T

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Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 320 - 461
Target Start/End: Complemental strand, 558542 - 558401
Alignment:
Q  320 ttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaaca 419  Q
    |||||||||||  |||  |||| ||||||||||||||||||||||||||| || ||| |||  ||   ||| | |  || ||| | ||||||||||| ||    
T  558542 ttgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttggaactgtatcttcaattttgtatttgcgttacagataaaggagtgaagca 558443  T
Q  420 tgtggtagaaaactgcacacaattgagagtgatcaacttgag 461  Q
    |||| ||||||||||||||||| ||||||  ||||| |||||    
T  558442 tgtgctagaaaactgcacacaaatgagagaaatcaatttgag 558401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 436
Target Start/End: Complemental strand, 641080 - 640843
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||| |||||||||  ||||||| ||||||||  ||||||||    |||| || |  | ||||||||| |||||| | |  | |||||||||||    
T  641080 gttttaaggatatgttgtaatgttagacatttgaacttagccggttgtgatggagtaaacctacttggaatgaaatttgaactaccaatattggaggtgt 640981  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgt 398  Q
    ||||||||||  ||||||  ||||||||||||| ||| || || | |||||||| ||| ||||| ||||||||  |||  || |||   |||   |||||    
T  640980 tgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattgtcattatgt 640881  T
Q  399 cacacaaaaaggagtgaaacatgtggtagaaaactgca 436  Q
     ||| | || |||||||| |||||||||||||||||||    
T  640880 aacaaagaagggagtgaatcatgtggtagaaaactgca 640843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 337
Target Start/End: Complemental strand, 659873 - 659736
Alignment:
Q  200 ttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgtt 299  Q
    ||||| |||||||||||||||||||| | || |||||  || | |||||||||| ||| |  |  | ||| || |||||||||| |||| | ||||||||    
T  659873 ttttaaggagatgttgtaacattagatatttaaacttagcctgctgttcaagagggaagctacgagtaataaattttgaagttcccaaactagaggtgtt 659774  T
Q  300 gaacttgtcgcatacaagagttgatgatgaaaaactat 337  Q
    ||||||||| |||||||| ||| || |||||| |||||    
T  659773 gaacttgtcacatacaagtgttaataatgaaacactat 659736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 12116576 - 12116640
Alignment:
Q  266 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaa 330  Q
    ||||||||||||| ||||  || || ||||||||||||||||| |||||||| ||||||||||||    
T  12116576 gaatgaactttgatgttccaaatttagaggtgttgaacttgtcacatacaagtgttgatgatgaa 12116640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 553448 - 553402
Alignment:
Q  395 atgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaa 441  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||||    
T  553448 atgtcacagataaaggagtgaatcatgtggtagaaaactgcacacaa 553402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 55505235 - 55505300
Alignment:
Q  395 atgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttga 460  Q
    |||||||| | || ||||||||||| ||| ||||||||||||||||| | |||| |||||||||||    
T  55505235 atgtcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttga 55505300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 376
Target Start/End: Original strand, 55505135 - 55505219
Alignment:
Q  292 gaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgt 376  Q
    |||||||||||||||||  ||||||  ||||| |||| || ||| ||||| | |||||||| ||||||||| |||||||| ||||    
T  55505135 gaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttgcatttgt 55505219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 453
Target Start/End: Complemental strand, 644789 - 644742
Alignment:
Q  406 aaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatc 453  Q
    |||||||||||||||||||| ||||| ||||||||| |||||| ||||    
T  644789 aaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatc 644742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 483
Target Start/End: Complemental strand, 1545728 - 1545654
Alignment:
Q  409 ggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttgaggtattgctataaagtccatgct 483  Q
    ||||||||| ||| |||| |||||||||||||| | ||||||||||| ||||||  |||  ||||||| ||||||    
T  1545728 ggagtgaaagatgcggtaaaaaactgcacacaactaagagtgatcaatttgaggggttgtgataaagtgcatgct 1545654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 12123423 - 12123481
Alignment:
Q  318 agttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgt 376  Q
    |||||| ||||||  ||| |||| |||| |||| |||||||||||||||||||||||||    
T  12123423 agttgacgatgaagcactttatgcaatcccaaaaagttgtcgtgggcttttgcaattgt 12123481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 566239 - 566182
Alignment:
Q  314 caagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgca 371  Q
    |||| ||||||||||||| ||| ||||| |||||||||   |||||||||||||||||    
T  566239 caagcgttgatgatgaaacactctatgtgatctcaaagtactgtcgtgggcttttgca 566182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 53761913 - 53761945
Alignment:
Q  409 ggagtgaaacatgtggtagaaaactgcacacaa 441  Q
    |||||||||||||||| ||||||||||||||||    
T  53761913 ggagtgaaacatgtggaagaaaactgcacacaa 53761945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 244 - 448
Target Start/End: Complemental strand, 6394984 - 6394780
Alignment:
Q  244 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaa 343  Q
    ||||||| ||||||||  |||||||||||||||| ||||| | |  |||||||||||||||||||  ||||||| |||||||||||||  || | ||| |    
T  6394984 tgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtga 6394885  T
Q  344 tctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaatt 443  Q
    ||||||||| |||| ||||||||||||||||    || || |  |||    |||||||| |||| || ||| ||||||||||||||||||||||||||||    
T  6394884 tctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaatt 6394785  T
Q  444 gagag 448  Q
    |||||    
T  6394784 gagag 6394780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 199 - 447
Target Start/End: Complemental strand, 6432326 - 6432078
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| |||||||||||||  ||| ||| ||||||||  ||  ||||  || |||||| |  |||||||||||||||||||||| |||  || ||||||    
T  6432326 gttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgt 6432227  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgt 398  Q
    ||||||||||  ||||||| ||||||||||||| ||| ||||| |||| ||||| |||| |||||||| ||||| | |  ||  | |  |||    ||||    
T  6432226 tgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattcctgtacaattgtgataatgt 6432127  T
Q  399 cacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgaga 447  Q
    |||||| || |||||||||| |||||||||||| |||||||||||||||    
T  6432126 cacacagaagggagtgaaacttgtggtagaaaaatgcacacaattgaga 6432078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 199 - 369
Target Start/End: Complemental strand, 6403025 - 6402855
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||||||||||||||||||| || |||||||| || || |||||||||||||| |  | |||||| ||||||| ||||| | || | || ||||    
T  6403025 gttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaagtgt 6402926  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 369  Q
    ||||||||||  |||| |  ||||||||||||| ||| ||||| |||||||||| |||| |||||||||||    
T  6402925 tgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttg 6402855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 199 - 447
Target Start/End: Complemental strand, 7119322 - 7119074
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||||||||| ||| |||| ||| ||||||||  ||   |||||||||||||| |  | ||||||||||||||  |||| | |  |||||||||    
T  7119322 gttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgt 7119223  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagct-gtttgtatg 397  Q
    ||||||||||  |||| |  ||||||||||||| |||  |||| ||||| |||| |||| | ||||||||| || | |  || ||||| | |||  ||||    
T  7119222 tgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattact-gaaagattgttattatg 7119124  T
Q  398 tcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgaga 447  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||||||||    
T  7119123 tcacaaaaaaagaagtgaaacatgtggaagaaaactgcacacaattgaga 7119074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 199 - 448
Target Start/End: Original strand, 6594540 - 6594789
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||||||||| ||| |||| ||| ||| ||||  |||| |||||||||||||| |  |||||||| ||||||  ||||| |||| |||||||||    
T  6594540 gttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttcccaaactggaggtgt 6594639  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgt 398  Q
    || |||||||  |||||   ||||||||||| | ||||  ||| |||||||||| |||| |||||||||| ||| |    |||||||  |||    || |    
T  6594640 tgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtgggcttttacaactaaaactagaaaattgtgatcatct 6594739  T
Q  399 cacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagag 448  Q
    |||| |  | ||||  ||||||||||||||||||||||||||||||||||    
T  6594740 cacagaggagggagccaaacatgtggtagaaaactgcacacaattgagag 6594789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 199 - 447
Target Start/End: Complemental strand, 7131800 - 7131552
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||||||||| ||| |||| ||| ||||||||  ||   |||||||||||||| |  | ||||||||||||||  |||| | |  |||||||||    
T  7131800 gttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgt 7131701  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaag-ctgtttgtatg 397  Q
    ||||||||||  |||| |  ||||||||||||| |||  |||| ||||| |||| |||| | ||||||||| || | |  || |||||  ||||  ||||    
T  7131700 tgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattact-gaaagattgttattatg 7131602  T
Q  398 tcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgaga 447  Q
    ||||| | |||| |||||||||||||| ||||||||||||||||||||||    
T  7131601 tcacaaacaaagcagtgaaacatgtggaagaaaactgcacacaattgaga 7131552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 185 - 357
Target Start/End: Original strand, 6585157 - 6585329
Alignment:
Q  185 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 284  Q
    |||||||| ||  ||||||| ||||||||| ||| ||||| || |||||||| || || |||||||||||||| |  | |||||| ||||||  ||||      
T  6585157 aaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactttttagttac 6585256  T
Q  285 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgt 357  Q
    | | |||||||| |||||||||||  ||||||  ||||||||||||| ||| ||||| |||||||||||||||    
T  6585257 ccagttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgt 6585329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 12102378 - 12102274
Alignment:
Q  252 agtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaag 351  Q
    |||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| | ||| |||| ||| | || ||||||    
T  12102378 agtgaaactgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaag 12102279  T
Q  352 agttg 356  Q
    |||||    
T  12102278 agttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 262 - 372
Target Start/End: Complemental strand, 6410108 - 6409998
Alignment:
Q  262 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtg 361  Q
    |||||||||||||||||||||| |||  || |||||||||||| |||  ||||||| |||||||||||||  || ||||| |||||||||| |||| ||     
T  6410108 catggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtc 6410009  T
Q  362 ggcttttgcaa 372  Q
    |||||||||||    
T  6410008 ggcttttgcaa 6409998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 243 - 440
Target Start/End: Complemental strand, 14820814 - 14820617
Alignment:
Q  243 ttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgta 342  Q
    ||||||| |||||||||  |||||||| ||||||| ||||| ||| || |||||||||||||| ||  ||||||  |||||| |||||| ||| ||| |     
T  14820814 ttgttcaggagtgaaactacatggaattaactttgcagttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatg 14820715  T
Q  343 atctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacaca 440  Q
    ||||| |||| |||| |||||||||||| ||| |  || ||||  |||    |||||||| | || || ||||||||||||||| |||||||||||||    
T  14820714 atctccaagaattgttgtgggcttttgcgattattacttgaaaaatgtaatgatgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacaca 14820617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 185 - 377
Target Start/End: Original strand, 11936195 - 11936387
Alignment:
Q  185 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 284  Q
    ||||||||| |  |||||||  || |||||||||||||||||| ||||| || ||  | ||||||||| |||| |  | |  | |||||||||||||||     
T  11936195 aaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcc 11936294  T
Q  285 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtc 377  Q
    |||| ||||||||||| |||||||   |||||||||||| ||| ||  ||| |||   ||||||||||||||| |||||||||||||| ||||    
T  11936295 caaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtc 11936387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 185 - 377
Target Start/End: Original strand, 11948175 - 11948367
Alignment:
Q  185 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 284  Q
    ||||||||| |  |||||||  || |||||||||||||||||| ||||| || ||  | ||||||||| |||| |  | |  | |||||||||||||||     
T  11948175 aaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcc 11948274  T
Q  285 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtc 377  Q
    |||| ||||||||||| |||||||   |||||||||||| ||| ||  ||| |||   ||||||||||||||| |||||||||||||| ||||    
T  11948275 caaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtc 11948367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 267 - 448
Target Start/End: Complemental strand, 6423314 - 6423133
Alignment:
Q  267 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggctt 366  Q
    |||||||||| |||||| |||  |||||||||||||||||||  |||||||||||   ||| ||| ||| ||||  ||||||||||||||| ||||| ||    
T  6423314 aatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggatt 6423215  T
Q  367 ttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagag 448  Q
    |||||| | |  || |||   |||   ||||| ||| | |||||| |||||| |||||||  ||||||||||||||||||||    
T  6423214 ttgcaactattacttgaagattgtgattatgtaacaaacaaaggactgaaacgtgtggtattaaactgcacacaattgagag 6423133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 262 - 440
Target Start/End: Complemental strand, 14818484 - 14818306
Alignment:
Q  262 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtg 361  Q
    |||||||| ||||||| ||||||||| || |||||||||||||| ||  ||||||  |||||| |||||| ||| ||| | ||||| |||| ||||  ||    
T  14818484 catggaattaactttgcagttctcaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctg 14818385  T
Q  362 ggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacaca 440  Q
    ||||||||| ||| |  || ||||  |||    |||||||| | || || ||||||||||| |||||||||||||||||    
T  14818384 ggcttttgcgattattacttgaaaattgtaataatgtcacagagaagggtgtgaaacatgtagtagaaaactgcacaca 14818306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 441
Target Start/End: Complemental strand, 6416068 - 6415889
Alignment:
Q  262 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtg 361  Q
    ||||||||| |||||| ||||| |||  |||||||||||||||||||  ||||||  ||| ||||| |||  || ||||| |||||||||| |||| | |    
T  6416068 catggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcg 6415969  T
Q  362 ggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaa 441  Q
    ||||||||||| | |  || |||   |||    |||||||| ||   |||||||||||||||||||| ||||||||||||    
T  6415968 ggcttttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaactgcacacaa 6415889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 447
Target Start/End: Original strand, 6603230 - 6603384
Alignment:
Q  293 aggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagct-gtt 391  Q
    |||||||| ||||| |  ||||| | ||||||||||||| | | ||||  |||||||||||||||| |||||||||| || | | | | ||||  | |||    
T  6603230 aggtgttggacttggcagatacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttggaactat-tattgaaatattgtt 6603328  T
Q  392 tgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgaga 447  Q
      ||||||||| | ||||||||||||||||||||||||||||||| |||| |||||    
T  6603329 attatgtcacagagaaaggagtgaaacatgtggtagaaaactgcaaacaactgaga 6603384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 372
Target Start/End: Original strand, 7994102 - 7994289
Alignment:
Q  185 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 284  Q
    |||||||| |||  |||||| ||| ||||||||| || || || |||||| |  ||| |||| |||||||||| |  |  ||||||||||||| |||||     
T  7994102 aaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttcc 7994201  T
Q  285 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 372  Q
     ||  | |||||||||||| ||||  ||||||| ||| |||| |||| ||||||||| |||||||||| ||||  ||| |||||||||    
T  7994202 gaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaa 7994289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 372
Target Start/End: Complemental strand, 9411456 - 9411347
Alignment:
Q  263 atggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgg 362  Q
    ||||| |||||||||| |||| |||  |||||||||||||||||||  ||||| | |||   ||||||| ||| ||||  |||||||||| |||||||||    
T  9411456 atggattgaactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtgg 9411357  T
Q  363 gcttttgcaa 372  Q
     |||||||||    
T  9411356 acttttgcaa 9411347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 19632511 - 19632431
Alignment:
Q  292 gaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 372  Q
    ||||||||| |||||||| ||||||  |||||||||||  |||| | ||| |||||||||| |||| ||||||||||||||    
T  19632511 gaggtgttggacttgtcgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggcttttgcaa 19632431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 439
Target Start/End: Original strand, 6589322 - 6589497
Alignment:
Q  264 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 363  Q
    |||||||||||||| ||||| ||   |||||||||||||||||||  ||||||  ||| ||||| ||| ||||||| | |||||||| | ||||   |||    
T  6589322 tggaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtataggg 6589421  T
Q  364 cttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacac 439  Q
    ||| ||||||| || ||  ||   |||   ||||||||  |  | |||||||||||||||||||||||||||||||    
T  6589422 cttatgcaattatcacttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcacac 6589497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 369
Target Start/End: Complemental strand, 14802429 - 14802331
Alignment:
Q  271 aactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 369  Q
    ||||||||||||| |||  |||| |||||||| |||||  ||||||  ||||||||||||| ||| ||||| || ||||||| |||| |||| ||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtggtcttttg 14802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 10579761 - 10579840
Alignment:
Q  290 tggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 369  Q
    |||||||||||||||||||  |||||| |||||||||| ||| ||| |||   |||||||||| |||| || ||||||||    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttg 10579840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 28935146 - 28935083
Alignment:
Q  267 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaa 330  Q
    |||||| ||||| |||| | || | ||||||||||||||||| |||||||||||||| ||||||    
T  28935146 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaa 28935083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 244 - 374
Target Start/End: Complemental strand, 6426631 - 6426501
Alignment:
Q  244 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaa 343  Q
    |||||||  |||||||  |||||||||||||||| ||||| | |  ||||||||||||| |||||  | |||||  ||||||||||||   | ||||  |    
T  6426631 tgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtcaaacacaagcattgatgatgaaactttttatgcga 6426532  T
Q  344 tctcaaagagttgtcgtgggcttttgcaatt 374  Q
    ||||||||| |||| || || ||||||||||    
T  6426531 tctcaaagaattgttgtcggattttgcaatt 6426501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 28935009 - 28934972
Alignment:
Q  404 aaaaaggagtgaaacatgtggtagaaaactgcacacaa 441  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  28935009 aaaaaggagtgaagcatgtggtagaaaattgcacacaa 28934972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 437
Target Start/End: Original strand, 7994326 - 7994354
Alignment:
Q  409 ggagtgaaacatgtggtagaaaactgcac 437  Q
    |||||||||||||||||||||||||||||    
T  7994326 ggagtgaaacatgtggtagaaaactgcac 7994354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 10579881 - 10579913
Alignment:
Q  409 ggagtgaaacatgtggtagaaaactgcacacaa 441  Q
    ||||| |||||||||||||||||||||||||||    
T  10579881 ggagttaaacatgtggtagaaaactgcacacaa 10579913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 200 - 377
Target Start/End: Complemental strand, 32267636 - 32267462
Alignment:
Q  200 ttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgtt 299  Q
    ||||| ||| |||||||||||||||||| ||||||||  ||   ||||||| ||||||||   |   ||||||||||||||||| |||||||||||| ||    
T  32267636 ttttaaggatatgttgtaacattagacatttgaacttatcccagtgttcaacagtgaaactaga---aatgaactttgaagttcccaaattggaggtatt 32267540  T
Q  300 gaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtc 377  Q
    ||||||||| || |||| |||||||||||||  ||| ||| | ||||||||||||||| ||||||||||| |||||||    
T  32267539 gaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtc 32267462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 199 - 376
Target Start/End: Original strand, 41889488 - 41889665
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||| |||||||||||||||| | ||||||||  |||| ||||||| |||||| |  | || |||||||||| |||||| ||||||||||||||    
T  41889488 gttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgt 41889587  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgt 376  Q
    ||||||| ||  |||||| |||||||||||||| ||| |||   ||||||||||||||| | ||||||| | ||||||    
T  41889588 tgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgt 41889665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 272 - 447
Target Start/End: Original strand, 41901542 - 41901717
Alignment:
Q  272 actttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgca 371  Q
    |||||||||||| |||| |||||||||||||||||||  |||||| |||||||||||||  ||| ||| | ||||||||||||||| |||| |||||| |    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaa 41901641  T
Q  372 attgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgaga 447  Q
    |||||| ||  ||   |||    |||||||| | || |||||||| ||||||||||||||||| || |||||||||    
T  41901642 attgtcacttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaaactgtacgcaattgaga 41901717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 372
Target Start/End: Complemental strand, 37937979 - 37937879
Alignment:
Q  272 actttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgca 371  Q
    |||||||||||| |||  | ||||||||| ||||| | ||||||||| |||||||| ||| ||| ||||||||||||||||  |||||||||||||||||    
T  37937979 actttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgca 37937880  T
Q  372 a 372  Q
    |    
T  37937879 a 37937879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 271 - 369
Target Start/End: Original strand, 38267562 - 38267660
Alignment:
Q  271 aactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 369  Q
    ||||||||||||| |||  | ||||||||| ||||| | |||||||||||||||||||| | ||| ||||||||||||||||  || ||||||||||||    
T  38267562 aactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggcttttg 38267660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 20478107 - 20478189
Alignment:
Q  290 tggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 372  Q
    |||||||||||||||||||  ||||||  |||||||| |||| | ||| ||| ||||||| || |||| ||||||||||||||    
T  20478107 tggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaa 20478189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 17205568 - 17205527
Alignment:
Q  395 atgtcacacaaaaaggagtgaaacatgtggtagaaaactgca 436  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  17205568 atgtcacagaaaaaggattgaaacatgtggtagaaaactgca 17205527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 448
Target Start/End: Original strand, 20478223 - 20478265
Alignment:
Q  406 aaaggagtgaaacatgtggtagaaaactgcacacaattgagag 448  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||    
T  20478223 aaaggagcgaaacatgtcgtagaaaactgcacacaactgagag 20478265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 12845635 - 12845582
Alignment:
Q  322 gatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattg 375  Q
    |||||||||  |||||||| |||||||||||||||| |||| || |||||||||    
T  12845635 gatgatgaagcactatatgcaatctcaaagagttgttgtggtctattgcaattg 12845582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 198 - 483
Target Start/End: Original strand, 45245018 - 45245303
Alignment:
Q  198 tgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtg 297  Q
    ||||||| ||||||||||||||||||| || || |||||     | ||||||||| || ||   | |||||| |||||||||||||  ||| | ||||||    
T  45245018 tgttttaaggagatgttgtaacattaggcatttaaacttagtttgctgttcaagactggaattacgtggaataaactttgaagttccaaaacttgaggtg 45245117  T
Q  298 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatg 397  Q
    ||||| |||||  | ||||  ||||||||||||| |||  |||| |||||||||||||||||||||||||||||| | |   |  |||  ||||   |||    
T  45245118 ttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaactattattgaaaaaatgttatcatg 45245217  T
Q  398 tcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttgaggtattgctataaagtccatgct 483  Q
    ||||| | || ||||||||||||||||||||||| ||||||||| | | || |||||| |||||| | |||| | |||| ||||||    
T  45245218 tcacagataagggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgct 45245303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 199 - 441
Target Start/End: Original strand, 1037598 - 1037840
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| |||||||||||||  ||||||| ||||| ||  ||   | ||||||||||||||  | | |||| |||||| ||||||   |||| |||||||    
T  1037598 gttttaaggagatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgt 1037697  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgt 398  Q
    | |||||||| |||||| | ||||||||||||| ||| ||| | |||||||||| |||| |||||||||| ||| ||| ||| ||||  |||    | ||    
T  1037698 ttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagt 1037797  T
Q  399 cacacaaaaaggagtgaaacatgtggtagaaaactgcacacaa 441  Q
    |||| | || || ||||||||||| || |||||||||||||||    
T  1037798 cacagagaatggtgtgaaacatgtagtcgaaaactgcacacaa 1037840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 266 - 369
Target Start/End: Original strand, 32785773 - 32785876
Alignment:
Q  266 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 365  Q
    ||||||||||| ||| || |||| | ||||||||||||||||| ||||||||| |||||||||||  ||| ||||| |||||||  |||| || ||||||    
T  32785773 gaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 32785872  T
Q  366 tttg 369  Q
    ||||    
T  32785873 tttg 32785876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 199 - 465
Target Start/End: Original strand, 15092085 - 15092351
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||| ||||| |||  ||| ||| |||||||| || || |||| ||| |||||||  |||||||||||||||| ||||| | |  |||||||||    
T  15092085 gttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttgcagttcccgagctggaggtgt 15092184  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgt 398  Q
    |||| |||||  | ||||  ||| ||||| ||| ||| ||||  |||||||||| |||| |||||||||||||| | |  || |||   ||||   ||||    
T  15092185 tgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattttgttataatgt 15092284  T
Q  399 cacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttgaggtat 465  Q
    |||| ||   ||||||||||||||| |||||||||||||||||||||||| ||| || ||| |||||    
T  15092285 cacagaagtgggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttgcggtat 15092351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 327
Target Start/End: Complemental strand, 7977757 - 7977615
Alignment:
Q  185 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 284  Q
    |||||||||||   |||||| |||||||||||||||||||||| || ||| |  || |||||||||| ||||| |  | ||||||||| || || |||      
T  7977757 aaggtattggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgaatctacgtggaatgaaattcgacgtttg 7977658  T
Q  285 caaattggaggtgttgaacttgtcgcatacaagagttgatgat 327  Q
    |||| | ||||  ||||||||||| ||||||| ||||||||||    
T  7977657 caaactcgaggctttgaacttgtcacatacaacagttgatgat 7977615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 448
Target Start/End: Complemental strand, 10614758 - 10614509
Alignment:
Q  199 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 298  Q
    |||||| ||| ||||||||| ||||| || ||||||||  ||  ||||  || |||||| |  | |||||||||| |||  |||| |||  |||||||||    
T  10614758 gttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgt 10614659  T
Q  299 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgt 398  Q
    ||||||||||  |||| |  ||| ||||| ||| ||| ||||| ||||| ||||  ||| |||||||||||||| | |  || |||   | |    ||||    
T  10614658 tgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattacttgaactttctcataatgt 10614559  T
Q  399 cacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagag 448  Q
    |||| || ||||||||||||||||||||||||||||||  ||||||||||    
T  10614558 cacagaagaaggagtgaaacatgtggtagaaaactgcatgcaattgagag 10614509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 244 - 448
Target Start/End: Original strand, 19468478 - 19468682
Alignment:
Q  244 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaa 343  Q
    |||||||||||||| |  | |||| ||||||||| ||||| |||  ||||||||||||| |||||  ||||||  ||||||||||||| ||| ||||| |    
T  19468478 tgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtga 19468577  T
Q  344 tctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaatt 443  Q
    |||||||||  ||| |||| |||||| |||| | | | ||  | |||    |||||||| | ||||||||||||||||||  |||||| ||| ||||| |    
T  19468578 tctcaaagaactgttgtggacttttggaattatttgtggacggttgtaatgatgtcacagagaaaggagtgaaacatgtgaaagaaaattgctcacaact 19468677  T
Q  444 gagag 448  Q
    |||||    
T  19468678 gagag 19468682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 52082678 - 52082582
Alignment:
Q  267 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 363  Q
    |||||||||| |||||  ||||||||||||||||||||||||  | |||| | |||||||||||| | | ||||| ||||||||||||||| |||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 52082582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 298 - 437
Target Start/End: Complemental strand, 7554554 - 7554415
Alignment:
Q  298 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatg 397  Q
    |||||||| ||  ||||||| ||||||||||||  ||| ||| | ||||||||||||||| |||| ||||| ||| |||  ||  || | |||    |||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatg 7554455  T
Q  398 tcacacaaaaaggagtgaaacatgtggtagaaaactgcac 437  Q
    ||||| |||| |||||||| ||||||||||||||||||||    
T  7554454 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 7554415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 461
Target Start/End: Original strand, 29719004 - 29719119
Alignment:
Q  346 tcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattga 445  Q
    |||| ||||||| |||| |||||||||||||  || ||||| ||| || |||||||| | || |||||||||||||||||  |||||||||  ||| |||    
T  29719004 tcaacgagttgttgtggccttttgcaattgttactggaaagttgtatgaatgtcacagagaatggagtgaaacatgtggttcaaaactgcaagcaactga 29719103  T
Q  446 gagtgatcaacttgag 461  Q
    | | |||||| |||||    
T  29719104 gggagatcaatttgag 29719119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 365
Target Start/End: Complemental strand, 52092874 - 52092776
Alignment:
Q  267 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 365  Q
    |||||||||| |||||  |||||||||||||||||||||| |  | |||| | |||||||||| | | | ||||| ||||||||||||| | |||||||    
T  52092874 aatgaactttcaagtttccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgggct 52092776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 244 - 365
Target Start/End: Original strand, 603 - 724
Alignment:
Q  244 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaa 343  Q
    ||||||||||||||||  | | |||| |||||| ||||||   |||| |||||||| |||||||| |||||||| || |||||||||| ||| ||| | |    
T  603 tgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatga 702  T
Q  344 tctcaaagagttgtcgtgggct 365  Q
    |||| |||| |||| |||||||    
T  703 tctcgaagaattgttgtgggct 724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 39256 - 39177
Alignment:
Q  292 gaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgca 371  Q
    ||||||||||||||| |   |||||  ||| ||||||||| ||| ||||| ||||||||||||||| |||||||||||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgca 39177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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