View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16254_high_2 (Length: 541)
Name: NF16254_high_2
Description: NF16254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16254_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 28 - 449
Target Start/End: Original strand, 4571680 - 4572092
Alignment:
| Q |
28 |
ggttatatcaacaatacatcaattcacagtttgactgtaatatcaagaattacaacatgatcgaaaccaacaacaatttaaatctttataatataaacaa |
127 |
Q |
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| T |
4571680 |
ggttttatcaacaatacatttattcacagttagactgtaatatcaagaattacgacgtgatcgaaaccaacag---tttaaatctttataatataaacaa |
4571776 |
T |
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| Q |
128 |
cattcacttgcaataactcaattggcgccacaattgtggtcacttttagacaaaataaaacatgatatcgcggcttgcagactgcaatttaaaaccataa |
227 |
Q |
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| T |
4571777 |
cattcagttgcaataactcaattggcgccacaattgtggtcacttttagacaaaataaaacatgatatcgcggcttgcagactgcaatttaaaaccataa |
4571876 |
T |
|
| Q |
228 |
acaaagatacaacttataagagaaaaaagcaaaggagtaccttttctgagacctgtttggtaaagctgaatttcttgcagaagaaggtgagaatgcattt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4571877 |
acaaagatacaacttataagagaaaaaagcaaaggagtaccttttctgagacctgtttggtaaagctgaatttcttgcagaagaaggtgagaatgtattt |
4571976 |
T |
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| Q |
328 |
ttctcaccatcctgcaagtttgtgcaacaaggttgtgattgtgatgcatctttttccatcacttgcattgatgagagcttaagaaatgatgaatctttag |
427 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4571977 |
ttctcaccatcttgcaagtttgtgcaacaaggttgtgattgtgatgga------tccatcacttgcattgatgagagcttaagaaatgatgaatctttag |
4572070 |
T |
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| Q |
428 |
cataaccaagagtgagtgatga |
449 |
Q |
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| T |
4572071 |
cataaccaagagtgagtgatga |
4572092 |
T |
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