View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16254_high_6 (Length: 329)
Name: NF16254_high_6
Description: NF16254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16254_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 10490488 - 10490787
Alignment:
| Q |
14 |
agagaaatagacacagaaatatcaatggtataacaaaataaatgaacctatggagcactacctgtggtggtccccacatgtatgggtgaggagcatgacc |
113 |
Q |
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| T |
10490488 |
agagaaatagacacagaaatatcaatggtataacaaaataaatgaacctatggagcactacctgtggtggtccccacatgtatgggtgaggagcatgacc |
10490587 |
T |
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| Q |
114 |
aggagcagcagccgagttgaaatatggtggaatgttgactctttgcccataatatgcctgaagatataacagaaacttaaaatcaccaaaagtagttttt |
213 |
Q |
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| T |
10490588 |
aggagcagcagccgagttgaaatatggaggaatgttgactctttgcccataatatgcctgaagatatagcagaaactttaaatcaccaaaagtagttttt |
10490687 |
T |
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| Q |
214 |
aatggacaattcttttcaaaagtgaaagcaatctgggaccaatgtaaatcccatcatagatatcatagtccgttcctcgcagattatcaaatccagttgc |
313 |
Q |
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| T |
10490688 |
aatgggcaattcttttcaaaagtgaaagcaatctgggaccaatgtaaatcccatcatagatatcatagtccgttcctcgcagattatcaaatccagttgc |
10490787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 48263698 - 48263584
Alignment:
| Q |
72 |
tacctgtggtggtccccacatgtatgggtgaggagcatgaccaggagcagcagccgagttgaaatatggtggaatgttgactctttgcccataatatgcc |
171 |
Q |
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| T |
48263698 |
tacctgtggtggcccccacatatatgggtgaggagtgtgaccagaagccacaggtgagttgtagtaaggtggcatggcaactcttggtccataatatgcc |
48263599 |
T |
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| Q |
172 |
tgaagatataacaga |
186 |
Q |
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| T |
48263598 |
tgaagatatagcaga |
48263584 |
T |
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