View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16254_low_1 (Length: 475)
Name: NF16254_low_1
Description: NF16254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16254_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Complemental strand, 49206713 - 49206271
Alignment:
| Q |
16 |
atcaattgcggtcagttcattgctgttggcacttatcctagtgggaagagctgcatttgttttccctctttccttcatatccaacttgtctaaaaagtcg |
115 |
Q |
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| T |
49206713 |
atcaattggggtcagttcattgctgttggcacttatcctagtgggaagagctgcatttgttttccctctttccttcatatccaacttgtctaagaagtct |
49206614 |
T |
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| Q |
116 |
caatctgagaaaattgagtttaagcaacaagtatgtatcttctcatttccatttcaagatcttcatagttgagtgattcaattgatgtattgcactttcg |
215 |
Q |
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| T |
49206613 |
caatctgagaaaattgagtttaagcaacaagtatgtatcttctcatttccatttcaagatcttcatagttgagtgagtcaattgatgtattgcactttcg |
49206514 |
T |
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| Q |
216 |
caccgatggtttgtctcaggtgacaatttggtgggcaggtctcatgcgtggagctgtttctattgcacttgcttacaatcaggtgaaagatcaaacttca |
315 |
Q |
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| T |
49206513 |
cgccgatggtttgtctcaggtgacaatttggtgggctggtctcatgcgtggagctgtttctattgcacttgcttacaatcaggtgaaagatcaaacttca |
49206414 |
T |
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| Q |
316 |
tagcttccaattcaacatcctgaaattatataattgactgatactaataaacactttttcacatgcagtttacaagactaggacatactaaattgcgtga |
415 |
Q |
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| T |
49206413 |
tagcttccaattcaacatcctgaaattatataattgactgatactaataaacactttttcacatgcagtttacaagactaggacatactaaattgcgtga |
49206314 |
T |
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| Q |
416 |
gaatgccatcatgatcactagtactattacagttgtactcttt |
458 |
Q |
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| T |
49206313 |
gaatgccatcatgatcactagtactattacagttgtactcttt |
49206271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 47135232 - 47135162
Alignment:
| Q |
59 |
ggaagagctgcatttgttttccctctttccttcatatccaacttgtctaaaaagtcgcaatctgagaaaat |
129 |
Q |
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| T |
47135232 |
ggaagagcagcatttgttttccccttgtcctttttatccaacttgactaaaaagtcacaaaatgagaaaat |
47135162 |
T |
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