View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16255_low_1 (Length: 355)
Name: NF16255_low_1
Description: NF16255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16255_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 41738119 - 41737783
Alignment:
| Q |
1 |
attattcttgagtagtctccccaagctcttccaaggtacacttttcctgttcctctaatactgcatcctacaaaagaaaaacctgtatcttgaagaggtg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41738119 |
attactcttgagtagtctccccaagctcttccaaggtacacttttcctgttcctctaatactgcatcctacaaaagaaaaacctgtatcttgaagaggtg |
41738020 |
T |
|
| Q |
101 |
aatccctatgatgtgctgcaattgctccatagttctcagctattgattgaagcctacatttctgataagtatacaaacagaatcattcaatgttccaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
41738019 |
aatccctatgatgtgctgcaattgctccatagttctcagctattgattgaagcctacacttctgataagtatacaacaagaatcattcaatgttccaaat |
41737920 |
T |
|
| Q |
201 |
atgaaactagttttgtaattttagtnnnnnnnnncatagaaaatgatcatttaactttacctcatagagtgattttgcattgccaaagatgaaatcaact |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41737919 |
atgaaactagttttgtaattttagtaaaaaaaaacatagaaaatgatcattttactttacctcatagagtgattttgcattgccaaagatgaaatcaact |
41737820 |
T |
|
| Q |
301 |
tttccttggatgagacacttgtagaagtaatgagttc |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
41737819 |
tttccttggatgagacacttgtagaagtaatgagttc |
41737783 |
T |
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