View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16255_low_3 (Length: 323)
Name: NF16255_low_3
Description: NF16255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16255_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 33900380 - 33900093
Alignment:
| Q |
17 |
aatatcaagactttcactagctaaataaatatggagtctagatgttcctccttcaaagtcttatgtatggaggttattaattaatgcatgatcatgtacc |
116 |
Q |
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| T |
33900380 |
aatatcaagacttgcactagctaaataaatatggagtctagatgttcctccttcaaagtcttatgtatggaggttattaattaatgcatgatcatgtacc |
33900281 |
T |
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| Q |
117 |
tacaaataaaaacttgatgatgacgagttgcaatattaccttaatgtgtaatctttgcctcaggaatatagagaacttattccaaattttctttgagtgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33900280 |
tacaaataaaaacttgatgatgacgagttgcaatattaccttaatgtgtaatctttgcctcaggaatatagagaacttattccaaattttctttgagtgt |
33900181 |
T |
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| Q |
217 |
ccatttgcaatcaaactttgttcttggtttgcaaactcaatcaatatgattctttagttctcctatatggatgacatttggaaatttt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33900180 |
ccatttgcaatcaaactttgttcttggtttgcaaactcaatcaatatgattctttagttctcctatatggatgacatttggaaatttt |
33900093 |
T |
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