View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16256_high_11 (Length: 471)

Name: NF16256_high_11
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16256_high_11
NF16256_high_11
[»] chr4 (6 HSPs)
chr4 (24-196)||(4106632-4106804)
chr4 (130-251)||(36907649-36907770)
chr4 (69-120)||(36907870-36907921)
chr4 (314-356)||(21226358-21226400)
chr4 (314-353)||(21224967-21225006)
chr4 (20-64)||(36908034-36908078)
[»] chr2 (6 HSPs)
chr2 (117-321)||(15764523-15764734)
chr2 (49-120)||(15764376-15764447)
chr2 (299-351)||(45114592-45114644)
chr2 (298-345)||(33003525-33003572)
chr2 (309-356)||(33003155-33003202)
chr2 (315-356)||(15765487-15765528)
[»] chr5 (5 HSPs)
chr5 (190-345)||(14278174-14278329)
chr5 (274-343)||(14278481-14278549)
chr5 (314-356)||(7491519-7491561)
chr5 (323-356)||(29500546-29500579)
chr5 (293-321)||(14278445-14278473)
[»] chr1 (6 HSPs)
chr1 (117-251)||(23076432-23076566)
chr1 (117-251)||(22770640-22770774)
chr1 (69-120)||(22770857-22770908)
chr1 (69-120)||(23076649-23076700)
chr1 (20-64)||(22771021-22771065)
chr1 (20-64)||(23076813-23076857)
[»] scaffold0169 (1 HSPs)
scaffold0169 (299-356)||(27039-27096)
[»] chr6 (2 HSPs)
chr6 (272-332)||(18749435-18749494)
chr6 (272-321)||(18749500-18749548)
[»] chr7 (3 HSPs)
chr7 (314-356)||(3986791-3986833)
chr7 (298-344)||(23256549-23256595)
chr7 (299-344)||(32390289-32390334)
[»] chr3 (1 HSPs)
chr3 (314-356)||(35942613-35942655)
[»] chr8 (1 HSPs)
chr8 (299-356)||(21190370-21190428)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 4106804 - 4106632
Alignment:
Q  24 tttgcttagaaaatgggggatgaggaggaacctccaattcttgttcccttcattttctggaactttctcttctctctttgctcacctcttccacactaat 123  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4106804 tttgcttaaaaaatgggggatgaggaggaacctccaattcttgttctcttcattttctggaactttctcttctctctttgctcacctcttccacactaat 4106705  T
Q  124 tttcctttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaag 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4106704 tttcctttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaag 4106632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 36907770 - 36907649
Alignment:
Q  130 ttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaagggtcattgtaaagttgttgtttttaatattata 229  Q
    ||||||| |||| ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  36907770 ttcttcttttttctaatttatgtgcttaacttgattctgtagttgaaaaattgaaatgggtgaaaagggtcattgtaaagtttctgtttttaatattata 36907671  T
Q  230 acaaaaatttacatatttgtta 251  Q
    | | ||||||||||||||||||    
T  36907670 aaagaaatttacatatttgtta 36907649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 36907921 - 36907870
Alignment:
Q  69 cccttcattttctggaactttctcttctctctttgctcacctcttccacact 120  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36907921 cccttcattttctggagctttctcttctctctttgctcacctcttccacact 36907870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 21226358 - 21226400
Alignment:
Q  314 cttaggtgctgttattgttgttgatggtggtggaggtgtagta 356  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  21226358 cttaggtggtgttattgttgttgatggtggtggaggtgtagta 21226400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 353
Target Start/End: Original strand, 21224967 - 21225006
Alignment:
Q  314 cttaggtgctgttattgttgttgatggtggtggaggtgta 353  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  21224967 cttaggtggtgttattgttattgatggtggtggaggtgta 21225006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 36908078 - 36908034
Alignment:
Q  20 ggtgtttgcttagaaaatgggggatgaggaggaacctccaattct 64  Q
    ||||||||||| ||||||||||||||| || |||| |||||||||    
T  36908078 ggtgtttgcttggaaaatgggggatgaagaagaacatccaattct 36908034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 9e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 117 - 321
Target Start/End: Original strand, 15764523 - 15764734
Alignment:
Q  117 cactaattttcctttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaagggtcattgtaaagttgttgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||   ||    
T  15764523 cactaattttcctttcttctattttgtaatttatgtgcttaacttgattttgtagttgaaaacttgaaatgagtgaaaagggtcattgtaaagtttcagt 15764622  T
Q  217 ttttaatattataacaaaaatttacatatttgttac-------aacttgattttgatattagagattttgttgtgtaatgggttgatgaatttttgttga 309  Q
    |||||||||||||||| ||||||  |||||| ||||       ||||| |||||||| ||||||||||| |||||| |||||||||||||||||||||||    
T  15764623 ttttaatattataacataaatttcaatattttttactacgtataacttaattttgatgttagagattttcttgtgttatgggttgatgaatttttgttga 15764722  T
Q  310 ttagcttaggtg 321  Q
    ||| ||||||||    
T  15764723 ttaccttaggtg 15764734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 15764376 - 15764447
Alignment:
Q  49 aggaacctccaattcttgttcccttcattttctggaactttctcttctctctttgctcacctcttccacact 120  Q
    |||| ||||| |||||| ||||||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  15764376 aggagcctcccattctttttcccttcattttctagagctttatcttctctctttgctcacctcttccacact 15764447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 45114592 - 45114644
Alignment:
Q  299 atttttgttgattagcttaggtgctgttattgttgttgatggtggtggaggtg 351  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  45114592 atttttgttgattagcttaggtggtgttattgttgttgatggttgtggaggtg 45114644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 33003525 - 33003572
Alignment:
Q  298 aatttttgttgattagcttaggtgctgttattgttgttgatggtggtg 345  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  33003525 aatttttgttgattaacttaggtggtgttattgttgttgatggtggtg 33003572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 33003202 - 33003155
Alignment:
Q  309 attagcttaggtgctgttattgttgttgatggtggtggaggtgtagta 356  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||    
T  33003202 attaacttaggtggtgttattgttgttgatggtggtggagatgtagta 33003155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 15765487 - 15765528
Alignment:
Q  315 ttaggtgctgttattgttgttgatggtggtggaggtgtagta 356  Q
    ||||||| ||||||||||||||||||| |||||||| |||||    
T  15765487 ttaggtggtgttattgttgttgatggtagtggaggtatagta 15765528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 190 - 345
Target Start/End: Complemental strand, 14278329 - 14278174
Alignment:
Q  190 tgaaaagggtcattgtaaagttgttgtttttaatattataacaaaaatttacatatttgttacaacttgattttgatattagagattttgttgtgtaatg 289  Q
    ||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||| ||     
T  14278329 tgaaaagggtcattgtaaagtttctgtttataatattataacagaaatttacatatttgttataaattgattttgatgttagagattttgttgtgttatt 14278230  T
Q  290 ggttgatgaatttttgttgattagcttaggtgctgttattgttgttgatggtggtg 345  Q
    |||||||||||||||||||||||| ||  ||| |||||||||||||||||| ||||    
T  14278229 ggttgatgaatttttgttgattagtttgagtggtgttattgttgttgatggaggtg 14278174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 14278481 - 14278549
Alignment:
Q  274 attttgttgtgtaatgggttgatgaatttttgttgattagcttaggtgctgttattgttgttgatggtgg 343  Q
    |||||||||| || |||||| ||| ||||||||||||||||||||| | ||||||||||| |||||||||    
T  14278481 attttgttgttta-tgggtttatggatttttgttgattagcttaggcggtgttattgttgatgatggtgg 14278549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 356
Target Start/End: Complemental strand, 7491561 - 7491519
Alignment:
Q  314 cttaggtgctgttattgttgttgatggtggtggaggtgtagta 356  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  7491561 cttaggtggtgttattgctgttgatggtggtggaggtgtagta 7491519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 29500546 - 29500579
Alignment:
Q  323 tgttattgttgttgatggtggtggaggtgtagta 356  Q
    ||||||||||||||||||||||||| ||||||||    
T  29500546 tgttattgttgttgatggtggtggatgtgtagta 29500579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 321
Target Start/End: Original strand, 14278445 - 14278473
Alignment:
Q  293 tgatgaatttttgttgattagcttaggtg 321  Q
    |||||||||||||||||||||||||||||    
T  14278445 tgatgaatttttgttgattagcttaggtg 14278473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 23076566 - 23076432
Alignment:
Q  117 cactaattttcctttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaagggtcattgtaaagttgttgt 216  Q
    ||||||||||  |||||||| |||| ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||||||||||||||  |||    
T  23076566 cactaatttttttttcttcttttttctaatttatgtgcttaacttgattctgtagttgaaaaattgaaatgggtgaaaagggtcattgtaaagtttctgt 23076467  T
Q  217 ttttaatattataacaaaaatttacatatttgtta 251  Q
    |||||||||| ||||| ||||||||||||||||||    
T  23076466 ttttaatattttaacagaaatttacatatttgtta 23076432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 22770774 - 22770640
Alignment:
Q  117 cactaattttcctttcttctattttgtaatttatgtgcttaacttaattttgtagttgaaaacttgaaatggatgaaaagggtcattgtaaagttgttgt 216  Q
    ||||||||||  | |||||| |||| ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||||||||||||||  |||    
T  22770774 cactaatttttttctcttcttttttctaatttatgtgcttaacttgattctgtagttgaaaaattgaaatgggtgaaaagggtcattgtaaagtttctgt 22770675  T
Q  217 ttttaatattataacaaaaatttacatatttgtta 251  Q
    |||||||||| ||||| ||||||||||||||||||    
T  22770674 ttttaatattgtaacagaaatttacatatttgtta 22770640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 22770908 - 22770857
Alignment:
Q  69 cccttcattttctggaactttctcttctctctttgctcacctcttccacact 120  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22770908 cccttcattttctggagctttctcttctctctttgctcacctcttccacact 22770857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 23076700 - 23076649
Alignment:
Q  69 cccttcattttctggaactttctcttctctctttgctcacctcttccacact 120  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23076700 cccttcattttctggagctttctcttctctctttgctcacctcttccacact 23076649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 22771065 - 22771021
Alignment:
Q  20 ggtgtttgcttagaaaatgggggatgaggaggaacctccaattct 64  Q
    ||||||||||| ||||||||||||||| || |||| |||||||||    
T  22771065 ggtgtttgcttggaaaatgggggatgaagaagaacatccaattct 22771021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 23076857 - 23076813
Alignment:
Q  20 ggtgtttgcttagaaaatgggggatgaggaggaacctccaattct 64  Q
    ||||||||||| ||||||||||||||| || |||| |||||||||    
T  23076857 ggtgtttgcttggaaaatgggggatgaagaagaacatccaattct 23076813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 27096 - 27039
Alignment:
Q  299 atttttgttgattagcttaggtgctgttattgttgttgatggtggtggaggtgtagta 356  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  27096 atttttgttgattagtttaggtggtgttattgttgttgatggtggtggaggtgaagta 27039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 18749494 - 18749435
Alignment:
Q  272 agattttgttgtgtaatgggttgatgaatttttgttgattagcttaggtgctgttattgtt 332  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||    
T  18749494 agattttgttgttta-tgggttgatgaatttttgttgattagtttaggtggtgttattgtt 18749435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 18749548 - 18749500
Alignment:
Q  272 agattttgttgtgtaatgggttgatgaatttttgttgattagcttaggtg 321  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||    
T  18749548 agattttgttgttta-tgggttgatgaatttttgttgattagcttaggtg 18749500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 356
Target Start/End: Complemental strand, 3986833 - 3986791
Alignment:
Q  314 cttaggtgctgttattgttgttgatggtggtggaggtgtagta 356  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  3986833 cttaggtggtgttattgttgttgatggtggtggaggtgtagta 3986791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 23256595 - 23256549
Alignment:
Q  298 aatttttgttgattagcttaggtgctgttattgttgttgatggtggt 344  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  23256595 aatttttgttgattagcttaggtcgtgttattgttgttgatggtggt 23256549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 32390334 - 32390289
Alignment:
Q  299 atttttgttgattagcttaggtgctgttattgttgttgatggtggt 344  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||    
T  32390334 atttttgttgattaatttaggtggtgttattgttgttgatggtggt 32390289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 35942613 - 35942655
Alignment:
Q  314 cttaggtgctgttattgttgttgatggtggtggaggtgtagta 356  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  35942613 cttaggtgatgttattgttgttgatggtggtggaggtgtagta 35942655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 21190428 - 21190370
Alignment:
Q  299 atttttgttgattagcttaggtgctgttattgttgttgatggtgg-tggaggtgtagta 356  Q
    |||||| || ||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  21190428 atttttttttattagcttaggtggtgttattgttgttgatggtggttggaggtgaagta 21190370  T

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