View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_high_14 (Length: 435)
Name: NF16256_high_14
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 7809550 - 7809188
Alignment:
| Q |
17 |
gtaaaatggctaataaatggtcaaattgttttacatggacaaatagaaaattgcacaaacttatcatgaattttcaatccctcgtccgtatcaataatat |
116 |
Q |
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| T |
7809550 |
gtaaaatggctaataaatggtcaaattgttttacatggacaaatagaa--ttgcacaaacttatcatgaattttcaatccctcgtccgtatcaataatat |
7809453 |
T |
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| Q |
117 |
ggcaattggcaattgccacccaatccaaaggtcactctcaatatgccaagacaaagtgtaaatccatttcaaagcttgtcatatactatgaccattttaa |
216 |
Q |
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| T |
7809452 |
ggcaattggcaattgccacccaatccaaaggtcactctcaatatgccaagacaaagtgtaaatccatttcaaagtttgttatacactatgaccattttaa |
7809353 |
T |
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| Q |
217 |
ggtcgctctcaagttcaatttaacatttgcatcaaatctttaaataattatattcgaagtgtatcagacactaaatacaaatacatcttcagccaaaatt |
316 |
Q |
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| T |
7809352 |
ggtcgctctcaagttcaacttaacatttgcatcaaatctttaaataattatattcgaagcgtgtcagacactaaatataaatacatcttcagccaaaatt |
7809253 |
T |
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| Q |
317 |
cgaaaattgattcctcacattatttgagtataacccactagtcccaaccacaattgttattaaca |
381 |
Q |
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| T |
7809252 |
cgaatattgattcctcacattatttgagtataacccactagtcccaaccacaattgttattaaca |
7809188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 428
Target Start/End: Complemental strand, 7809185 - 7809154
Alignment:
| Q |
397 |
cttaaactaagaatcattccattttcatctca |
428 |
Q |
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| T |
7809185 |
cttaaactaagaatcattccattttcatctca |
7809154 |
T |
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