View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_high_16 (Length: 427)
Name: NF16256_high_16
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 24 - 422
Target Start/End: Original strand, 11359614 - 11360008
Alignment:
| Q |
24 |
gaagaataatctatctttggtttgtaaattgtgtaatttctacggtctcggacagtttcttagaatatttcatgtacattttttgaaatatatttttaag |
123 |
Q |
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| T |
11359614 |
gaagaataatccatctttggtttgtaaattgtgtaatttctacggtctcgcacagtttcttagaatatttcatgtacattttttgaaatatatttttaag |
11359713 |
T |
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| Q |
124 |
aggtataatgatatcccttnnnnnnngaggtattgtgatatgttaaatcccgcgaacttaacacatttgataaagataatgcataacttatttaaggatc |
223 |
Q |
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| T |
11359714 |
aggtattatgatatcccttaaaaaaagaggtattgtgatatg-taaatcccgcgaacttaacacatttgataaagataatgcataatttatttaaggatc |
11359812 |
T |
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| Q |
224 |
ggattttgaaccttcaccactccatttatttaccgtnnnnnnntatgaatttctacatactagactacttgactaaaaaattcgacaaatgnnnnnnnga |
323 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||| |||||||||||||||||| || |
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| T |
11359813 |
ggattttgaaccttcaccacttcatttatttaccgt-aaaaaatatgaatttttatatactagactacttgattaaaaaattcgacaaatgaaaaaaaga |
11359911 |
T |
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| Q |
324 |
gatattatgatatgttaaatcgacaagtgaatcttccgaaaaagattcccnnnnnnnnngaatgcattcaattcaaccacgtctattattcttctctct |
422 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
11359912 |
gatattatgatatgttaaatcgacaagtgaat-ttccgaaaaaaattccc-taaaaaaagaatgcattcaattcaaccacgtctattattcttatctct |
11360008 |
T |
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