View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_high_20 (Length: 396)
Name: NF16256_high_20
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 32877840 - 32877465
Alignment:
| Q |
18 |
aggaaaggcctagcacgttgtcgttgccactttctctgcgtgcagggacttttggaaactgaattgcaaacattgatgggtgtgaagcagatacattgta |
117 |
Q |
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| T |
32877840 |
aggaaaggcctagcacgttgtcgttgccactttctctgcgtggagggacttttggaaactgaattacaaacattgatgggtgtgaagcagatacattgta |
32877741 |
T |
|
| Q |
118 |
gtgtgccccaatcagatttgtgcttatgctatatgtatgttcactatgtttacgggttccggaatgaactctcttgcaaccaattatttgtaattgtatt |
217 |
Q |
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| T |
32877740 |
gtgtgccccaatcagatttgtgcttatgctatatgtatgtttactatgtttacgggttccggaatgaactctcttgcaaccaatcatttgtacttgtatt |
32877641 |
T |
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| Q |
218 |
gttgaatcttgaatgttaccgatgttaacaaccccagccgttacaaggccctttcttttctttttgttcgtggcattccgcttcacccaagaa----cgg |
313 |
Q |
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| T |
32877640 |
gtcgaatgttgaatgttaccgatgttaacatccccagccgttacaaggccctttcttttatttttgttcgtggcattccgcttcacccaagaatggtcga |
32877541 |
T |
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| Q |
314 |
tttcctacattactgcactagtttctttgcacatatgcacagttgcattttcttagttggcgaaattttcatctct |
389 |
Q |
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| T |
32877540 |
tttcttgcattactgcactagtttgtttgcacatatgcacaattgcattttcttagttgtcgaaattttcatctct |
32877465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 32879993 - 32880179
Alignment:
| Q |
182 |
tgaactctcttgcaaccaattatttgtaattgtattgttgaatcttgaatgttaccgatgttaacaaccccagccgttacaaggccctttcttttctttt |
281 |
Q |
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| T |
32879993 |
tgaactctcttgcaaccaatcatttgtaactgtattgttgaatcttgaat-ttactgatgtttccatcccc-gccgttgcaaggccctttcttttatttt |
32880090 |
T |
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| Q |
282 |
tgttcgtggcattccgcttcacccaagaacggt----ttcctacattactgcactagtttctttgcacatatgcacagttgcattttct |
366 |
Q |
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| T |
32880091 |
tgttcctagcattccgcttcaccctagaacgatcgatttactgcattactgcacaaatgtctttgcacatattcagagttgcattttct |
32880179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 32878522 - 32878584
Alignment:
| Q |
34 |
gttgtcgttgccactttctctgcgtgcagggacttttggaaactgaattgcaaacattgatgg |
96 |
Q |
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| T |
32878522 |
gttgtcgttgccactttctctgtgtccagagacttttggaaactgaaccgaaaacattgatgg |
32878584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 31760189 - 31760385
Alignment:
| Q |
40 |
gttgccactttctctgcgtgcagggacttttggaaactgaattgcaaacattgatgggtgtgaagc---------agatacattgtagtgtgccccaatc |
130 |
Q |
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| T |
31760189 |
gttgccactttctctatgtgcagggacttttggaaactggatcgcaaactttgatgggtgtgaagcaaatacattatatacattataatgtgccccaatc |
31760288 |
T |
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| Q |
131 |
agatttgtgcttatgctatatgtatgttcactatgtttacgggttccggaatgaactctcttgcaaccaattatttgtaattgtattgttgaatcttgaa |
230 |
Q |
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||||| | ||||||||||||| ||||||||| |||||| |||||||||||| |||||| ||| |||||||| | ||||||||||||||||| |
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| T |
31760289 |
agattcattcttatgctatatgcatgttcact---------ggttccagaatgaactctcctgcaactaatcatttgtaactctattgttgaatcttgaa |
31760379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 26750757 - 26750871
Alignment:
| Q |
186 |
ctctcttgcaaccaattatttgtaattgtattgttgaatcttgaatgttaccgatgttaacaaccccagccgttacaaggccctttcttttctttttgtt |
285 |
Q |
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|||||| |||||||| |||||||| | |||||||||| ||||| |||||| |||||| || || |||| ||| | |||||||||||||| |||| ||| |
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| T |
26750757 |
ctctctcgcaaccaaccatttgtaactttattgttgaaacttgactgttactgatgtttccatcctcagcagttgcgaggccctttcttttgttttcgtt |
26750856 |
T |
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| Q |
286 |
cgtggcattccgctt |
300 |
Q |
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| T |
26750857 |
cctggcattctgctt |
26750871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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