View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_high_22 (Length: 382)
Name: NF16256_high_22
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 42393879 - 42394229
Alignment:
| Q |
11 |
caaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaaat |
110 |
Q |
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| T |
42393879 |
caaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaaat |
42393978 |
T |
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| Q |
111 |
ccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393979 |
ccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatc |
42394078 |
T |
|
| Q |
211 |
tttcacaataccctgcaaatcaaaccgagccaacgcaggnnnnnnntccgacaagttcggcttccctatgagctgcaccatctccgctgctgtcttccta |
310 |
Q |
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| T |
42394079 |
tttcacaataccctgcaaatcaaaccgagccagcgcaggaaaaaaatctgacaagttcggcttccctatgagctgcaccatctctgctgctgtcttccta |
42394178 |
T |
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| Q |
311 |
aactccgctcctaagctctccctctctccgtcctccatcgccgcaccccac |
361 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42394179 |
aattccgctcctaagctctccctctcaccgtcctccatcgccgcaccccac |
42394229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 42377961 - 42378314
Alignment:
| Q |
11 |
caaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaaat |
110 |
Q |
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|||| ||||||||||| ||| |||||||| || || || |||| || |||||||| |||||||| |||||||||||||||||||||||||||| ||| | |
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| T |
42377961 |
caaaagtagcataccatgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaacaaaaactgcagaaagt |
42378060 |
T |
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| Q |
111 |
ccttactttcact---ctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcat |
207 |
Q |
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|| |||| || | |||||| || || | |||||| || |||||||||||||||||| |||||||| |||||||| |||||||||||| |||||| |
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| T |
42378061 |
ccctactcccattattctccttcccatcctcttccttcttcaatcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcattcat |
42378160 |
T |
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| Q |
208 |
atctttcacaataccctgcaaatcaaaccgagccaacgcaggnnnnnnntccgacaagttcggcttccctatgagctgcaccatctccgctgctgtcttc |
307 |
Q |
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||||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||||||| | ||||||||||||||||| | | || | |
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| T |
42378161 |
atctttcacaacaccctgcaaatcaaaccgggccaacccaggaaaaaaatccgacaaattcggcttccccaatagctgcaccatctccgccaccgcctcc |
42378260 |
T |
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| Q |
308 |
ctaaactccgctcctaagctctccctctctccgtcctccatcgccgcaccccac |
361 |
Q |
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||||||||||| ||||| |||||||||||| | | |||| | ||||||||||| |
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| T |
42378261 |
ctaaactccgcccctaaactctccctctcttctccttccacccccgcaccccac |
42378314 |
T |
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