View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_high_37 (Length: 269)
Name: NF16256_high_37
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 2628633 - 2628515
Alignment:
| Q |
140 |
aatatacaacatttatgtgtgctacaagtatattactttaaatctaagtgacagtactgtacttcagagcttttattttcatgtccatattacagggcgg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628633 |
aatatacaacatttatgtgtgctacaagtatattactttaaatctaagtgacagtactgtacttcagagcttttattttcatgtccatattacagggcgg |
2628534 |
T |
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| Q |
240 |
ttcaaatatctttgcctat |
258 |
Q |
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||||||||||||||||||| |
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| T |
2628533 |
ttcaaatatctttgcctat |
2628515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 22979307 - 22979190
Alignment:
| Q |
141 |
atatacaacatttatgtgtgctacaagtatattactttaaatctaagtgacagtactgtacttcagagcttttattttcatgtccatattacagggcggt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22979307 |
atatacaacatttatgtgtgctacaagtatattactttaaatctaattgacagtactgtacttcagagcttttattttcatgtccatattacagggcggt |
22979208 |
T |
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| Q |
241 |
tcaaatatctttgcctat |
258 |
Q |
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| |||||||||||||||| |
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| T |
22979207 |
tgaaatatctttgcctat |
22979190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 23809097 - 23809214
Alignment:
| Q |
141 |
atatacaacatttatgtgtgctacaagtatattactttaaatctaagtgacagtactgtacttcagagcttttattttcatgtccatattacagggcggt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23809097 |
atatacaacatttatgtgtgctacaagtatattactttaaatctaattgacagtactgtacttcagagcttttattttcatgtccatattacagggcggt |
23809196 |
T |
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| Q |
241 |
tcaaatatctttgcctat |
258 |
Q |
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| |||||||||||||||| |
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| T |
23809197 |
tgaaatatctttgcctat |
23809214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 22979428 - 22979352
Alignment:
| Q |
20 |
agagtaagtccctaaaatccaattaacacttccattttaaattgaagtattttcaaaataagttaattgaactatca |
96 |
Q |
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| T |
22979428 |
agagtaagtccctaaaatccaattaacacttccattttaaattgaagtattttcaaaataagttaattgaactatca |
22979352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 23808976 - 23809052
Alignment:
| Q |
20 |
agagtaagtccctaaaatccaattaacacttccattttaaattgaagtattttcaaaataagttaattgaactatca |
96 |
Q |
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| T |
23808976 |
agagtaagtccctaaaatccaattaacacttccattttaaattgaagtattttcaaaataagttaattgaactatca |
23809052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 2628726 - 2628677
Alignment:
| Q |
47 |
acttccattttaaattgaagtattttcaaaataagttaattgaactatca |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628726 |
acttccattttaaattgaagtattttcaaaataagttaattgaactatca |
2628677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 40521364 - 40521240
Alignment:
| Q |
141 |
atatacaacatttatgtgt---gctacaagtatattactttaaatctaagtgacagta---ctgtacttcagagcttttatttt-catgtccatattaca |
233 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
40521364 |
atatacaacatttatgtgtagtgctacaagtatattactttaaatctaagtcacagtagtactgtacttcagagcttttatttttcatgtccatattaca |
40521265 |
T |
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| Q |
234 |
gggcggttcaaatatctttgcctat |
258 |
Q |
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||||||||||||||| ||||||||| |
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| T |
40521264 |
gggcggttcaaatatttttgcctat |
40521240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 40512515 - 40512449
Alignment:
| Q |
193 |
gtactgtacttcagagcttttatttt-catgtccatattacagggcggttcaaatatctttgcctat |
258 |
Q |
| |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
40512515 |
gtactgtacttcagagcttttatttttcatgtcaatattacagggcggttccaatatttttgcctat |
40512449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 12662672 - 12662621
Alignment:
| Q |
20 |
agagtaagtccctaaaatccaattaacacttccattttaaattgaagtattt |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
12662672 |
agagtaagtccctaaaatccaattaacacttccattttaaatcgaggtattt |
12662621 |
T |
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