View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_high_39 (Length: 264)
Name: NF16256_high_39
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 33237563 - 33237760
Alignment:
| Q |
10 |
agatgaacgaagaaattaaattgttttacatgtaatctttaacatacatttgtattaattgtatagcaattcttttttctgttcttgtttcagggactat |
109 |
Q |
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| T |
33237563 |
agatgaacgaagaaattaaattgttttacatgtaatctttaacatacatttgtattaattctatagcaattcttttttctgttcttgtttcagggactat |
33237662 |
T |
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| Q |
110 |
acactatcagattttaaagaaaaacttaattttgttgattctaagttgaaggaacatctgaaactaagcaaatggcaaataggtg-cacacctggtgg |
206 |
Q |
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| T |
33237663 |
acactatcagattttaaagaaaaacttaattttgttgattctaagttgaaggaacatctgaaactaagcaaatggcaaataggtgacacacctggtgg |
33237760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 26376680 - 26376748
Alignment:
| Q |
103 |
ggactatacactatcagattttaaagaaaaacttaattttgttgattctaagttgaaggaacatctgaa |
171 |
Q |
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|||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||||| |
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| T |
26376680 |
ggactatacactatcagattctaaagacaaactttattttgttgattctaagttgaaggaacctctgaa |
26376748 |
T |
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