View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_high_41 (Length: 256)
Name: NF16256_high_41
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 22042732 - 22042982
Alignment:
| Q |
1 |
ttttgttcttttgtttgtgtttt-ataagattctatattcttctagaccagaaaacgaaatacttttggtccaaggatgatgtacaaacagcccgtgttt |
99 |
Q |
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| T |
22042732 |
ttttgttcttttgtttgtgtttttataagattctatgttcttctagaccagaaaacgaaatacttttggtccaaggatgaagtacaaacagcccgtgttt |
22042831 |
T |
|
| Q |
100 |
tgttttacctacgagtcattccaactttgattgagtgtttgcccggccctgtattcggagacatggtaggtccaactatgttcttctatcctatatcaac |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
22042832 |
tgctttacctacgagtcattccaactttgattgagtgtttgcgcggccctgtattcggagacatggtagctccaactatgttcttgtatcctatatcaac |
22042931 |
T |
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| Q |
200 |
taagtacatatttagttttgttttgtttttccacaaattagtttcatttca |
250 |
Q |
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| T |
22042932 |
taagtacatatttagttttgttttgtttttccacaaattagtttcatttca |
22042982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 250
Target Start/End: Complemental strand, 2424685 - 2424437
Alignment:
| Q |
2 |
tttgttcttttgtttgtgttttataagattctatattcttctagaccagaaaacgaaatacttttggtccaaggatgatgtacaaacagcccgtgttttg |
101 |
Q |
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|||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
2424685 |
tttgttctttggtttgtgttttataagattatatgttcttctagaccagaaaaccaaatacttttggtccaaggatgaagtgcaaacagcccgtgttttg |
2424586 |
T |
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| Q |
102 |
ttttacctacgagtcattccaactttgattgagtgtttgcccggccctgtattcggagacatggtaggtccaactatgttcttctatcctatatcaacta |
201 |
Q |
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| T |
2424585 |
ttttacctacgagtcattccaactttgattgagtgtttgcccggccctgtatttggagacatggtagctccaactatgttcttgtatcctatatcaacta |
2424486 |
T |
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| Q |
202 |
agtacatatttagttttgttttgtttttccacaaattagtttcatttca |
250 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2424485 |
agtacatatttagttttgctttgtttttccacaaattagtttcatttca |
2424437 |
T |
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