View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_high_51 (Length: 220)
Name: NF16256_high_51
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 4164952 - 4165032
Alignment:
| Q |
103 |
ccctgctgaatatattacatctatgattctatatatggtgtacatctatatccttcaaaaacaaaatctatgattctatac |
183 |
Q |
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| T |
4164952 |
ccctgctgaatatattacatctatgattctatatatggtgtacatctatatccttcaaaaacaaaatctatgattctatac |
4165032 |
T |
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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4164879 - 4164952
Alignment:
| Q |
1 |
aaaggagctgctattccagcagtttgcaatgttcattgaatgaaagtgagaaataaagttacgagcaaatgatc |
74 |
Q |
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| T |
4164879 |
aaaggcgctgctattccagcagtttgcaatgttcattgaatgaaagtgagaaataaagttacgagcaaatgatc |
4164952 |
T |
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