View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_high_53 (Length: 205)
Name: NF16256_high_53
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_high_53 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 31318838 - 31318673
Alignment:
| Q |
22 |
gaatgtaaatctttatatgacaattcagaaggcacacgagcggtcgaagttaaagaatatggccacggctttcataatttagttatcgaggttatggaga |
121 |
Q |
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| T |
31318838 |
gaatgtaaatctttatatgacaattcagaaggcacacgagcggttgaagttaaagaatatggccatgactttcataatttagttatcgaggttatggagc |
31318739 |
T |
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| Q |
122 |
aatcatttatagggataaaaatattcatcatatgaatgaaccattatttatataatccttaggcct |
187 |
Q |
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| T |
31318738 |
aatcatttatagggataaaaatattcatcatatgagtgaaccattatttatataatccttaggcct |
31318673 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 2506112 - 2506209
Alignment:
| Q |
91 |
tttcataatttagttatcgaggttatggagaaatc----atttatagggataaaaatattcatcatatgaatgaaccattatttatataatccttagg |
184 |
Q |
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| T |
2506112 |
tttcataatttagttatggaggttattgagcaatccaacatctgtagggatagaaatattcttcctaaaaatgaaccattgttcatataatccttagg |
2506209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 23854448 - 23854365
Alignment:
| Q |
42 |
caattcagaaggcacacgagcggtcgaagttaaagaatatggccacggctttcataatttagttatcgaggttatggagaaatc |
125 |
Q |
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| T |
23854448 |
caatttaggaggcacacgagatgttgacgtcaaaggatatgtccatggctttcataattgagttatggaggttatggagcaatc |
23854365 |
T |
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