View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16256_high_8 (Length: 500)

Name: NF16256_high_8
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16256_high_8
NF16256_high_8
[»] chr1 (5 HSPs)
chr1 (222-353)||(35583626-35583757)
chr1 (20-145)||(35583243-35583368)
chr1 (357-496)||(35583809-35583948)
chr1 (58-106)||(1815306-1815354)
chr1 (59-106)||(43492457-43492504)
[»] chr6 (1 HSPs)
chr6 (37-106)||(16766757-16766826)
[»] chr4 (2 HSPs)
chr4 (37-106)||(30982808-30982877)
chr4 (37-106)||(34306745-34306814)
[»] chr5 (1 HSPs)
chr5 (59-106)||(7677765-7677812)
[»] chr3 (1 HSPs)
chr3 (59-106)||(40993298-40993345)
[»] chr2 (2 HSPs)
chr2 (59-106)||(2438682-2438729)
chr2 (36-106)||(27286221-27286291)
[»] chr7 (3 HSPs)
chr7 (73-106)||(7197274-7197307)
chr7 (59-103)||(8234198-8234242)
chr7 (37-101)||(9778559-9778623)
[»] scaffold0053 (1 HSPs)
scaffold0053 (58-106)||(8847-8895)
[»] chr8 (1 HSPs)
chr8 (37-101)||(8343381-8343445)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 222 - 353
Target Start/End: Original strand, 35583626 - 35583757
Alignment:
Q  222 cctggacggagtttgtttgtggcggtggtgggcaactgcgttgagttggggtgtgacttcagcctgtttctgctaaagcggcagccgcttcatttcgttt 321  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  35583626 cctggacggagtttgtttgtggcggaggtgggcaactgcgttgagttggggtgcgacttcagcctgtttctgctaaagcggcagccgcttcatttcattt 35583725  T
Q  322 ttgtaaatggaacgcaactgctcagtttttgt 353  Q
    ||||||||||||||||||||||||||||||||    
T  35583726 ttgtaaatggaacgcaactgctcagtttttgt 35583757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 35583243 - 35583368
Alignment:
Q  20 acaaatgtatgagaggttatgaagcacagacattctatagattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgacaacaacactgacaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  35583243 acaaatgtatgagaggttatgaagcacagacattctatagattaggcgtgacacagtgtcgggcatgtgttgtgtcagacaccgacaacaacactgacaa 35583342  T
Q  120 gtatgattagacttaattaagtggtg 145  Q
    ||||||||||||||||||||||||||    
T  35583343 gtatgattagacttaattaagtggtg 35583368  T

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Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 357 - 496
Target Start/End: Original strand, 35583809 - 35583948
Alignment:
Q  357 tgggctttttgtttcttttgaatttaaacatgtttgtaagtgagtgattagtctcacatcgactatgaatgagtcaaatgttcaagtgcaaataattaat 456  Q
    |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  35583809 tgggctttttgtttctcttgaattcaaacatgtttgtaagtgactgattagtctcacatcaattatgaatgagtcaagtgttcaagtgcaaataattaat 35583908  T
Q  457 ccgtcttttgatgtcctagaatattggccctttgctactc 496  Q
    || ||||||||||||||||||||||| ||||||| |||||    
T  35583909 ccctcttttgatgtcctagaatattgaccctttgttactc 35583948  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 1815354 - 1815306
Alignment:
Q  58 agattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    |||||||||||| | ||||||||||||||||| ||||| ||||||||||    
T  1815354 agattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgaca 1815306  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 43492457 - 43492504
Alignment:
Q  59 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    |||||||||||   ||||||||||||||||||||||| ||||||||||    
T  43492457 gattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgaca 43492504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 16766826 - 16766757
Alignment:
Q  37 tatgaagcacagacattctatagattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    |||||||||| ||||||||   ||||||||||| | |||||||||||| |||||||||| ||||||||||    
T  16766826 tatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgaca 16766757  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 30982808 - 30982877
Alignment:
Q  37 tatgaagcacagacattctatagattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    |||||||||| |||| ||| | ||||||||||| | |||||||||||| |||| ||||| ||||||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgaca 30982877  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 34306745 - 34306814
Alignment:
Q  37 tatgaagcacagacattctatagattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    ||||||||||  ||||||   |||||||||||| | |||||||||||| |||| ||||| ||||||||||    
T  34306745 tatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgaca 34306814  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 7677812 - 7677765
Alignment:
Q  59 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    ||||||||||| | ||||||||||||||||  ||||||||||||||||    
T  7677812 gattaggcgtgtcccggtgtcggacatgtgacgtgtcagacaccgaca 7677765  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 40993298 - 40993345
Alignment:
Q  59 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    ||||||||||| | ||||||||||||||||| ||||| ||||||||||    
T  40993298 gattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgaca 40993345  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 2438682 - 2438729
Alignment:
Q  59 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    ||||||||||| | ||||||||||||||||| ||||| ||||||||||    
T  2438682 gattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgaca 2438729  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 27286221 - 27286291
Alignment:
Q  36 ttatgaagcacagacattctatagattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    |||||||||||||||| ||| ||||||||   || | ||||||||||||||||| ||||| |||| |||||    
T  27286221 ttatgaagcacagacactctttagattagatatgtcccggtgtcggacatgtgtcgtgtccgacatcgaca 27286291  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 7197274 - 7197307
Alignment:
Q  73 cggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    ||||||||||||||||||||||| ||||||||||    
T  7197274 cggtgtcggacatgtgttgtgtccgacaccgaca 7197307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 8234242 - 8234198
Alignment:
Q  59 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccg 103  Q
    ||||||||||| | ||||||||||||||||| ||||| |||||||    
T  8234242 gattaggcgtgtctcggtgtcggacatgtgtcgtgtccgacaccg 8234198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 9778623 - 9778559
Alignment:
Q  37 tatgaagcacagacattctatagattaggcgtgacacggtgtcggacatgtgttgtgtcagacac 101  Q
    |||||||||| |||| ||  | ||||||||||| | |||||||||||| |||||||||| |||||    
T  9778623 tatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacac 9778559  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 8895 - 8847
Alignment:
Q  58 agattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 106  Q
    |||||||||||| | |||||||||||| |||| ||||| ||||||||||    
T  8895 agattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgaca 8847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 8343445 - 8343381
Alignment:
Q  37 tatgaagcacagacattctatagattaggcgtgacacggtgtcggacatgtgttgtgtcagacac 101  Q
    ||||||||||||||| |||   ||||||||||| | |||||||||||| |||| ||||| |||||    
T  8343445 tatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcggacac 8343381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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