View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16256_low_12 (Length: 467)

Name: NF16256_low_12
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16256_low_12
NF16256_low_12
[»] chr2 (16 HSPs)
chr2 (15-315)||(821274-821574)
chr2 (51-274)||(973652-973875)
chr2 (138-274)||(957809-957945)
chr2 (40-264)||(410469-410693)
chr2 (130-264)||(965166-965300)
chr2 (126-268)||(1400003-1400142)
chr2 (126-268)||(1403721-1403863)
chr2 (374-445)||(821144-821215)
chr2 (375-443)||(410252-410320)
chr2 (375-443)||(965465-965533)
chr2 (380-443)||(974016-974079)
chr2 (386-449)||(982091-982154)
chr2 (392-443)||(963578-963629)
chr2 (393-443)||(989773-989823)
chr2 (375-442)||(824884-824948)
chr2 (403-443)||(1399555-1399595)
[»] chr3 (1 HSPs)
chr3 (19-276)||(45810093-45810349)
[»] chr7 (8 HSPs)
chr7 (45-274)||(12105489-12105718)
chr7 (33-248)||(28449405-28449617)
chr7 (380-442)||(1459328-1459390)
chr7 (375-443)||(1446010-1446078)
chr7 (216-269)||(1459135-1459188)
chr7 (375-442)||(12105272-12105339)
chr7 (392-436)||(1333502-1333546)
chr7 (392-436)||(28449797-28449841)
[»] chr6 (2 HSPs)
chr6 (19-264)||(10116363-10116604)
chr6 (375-443)||(10116747-10116815)
[»] chr1 (3 HSPs)
chr1 (38-185)||(48675085-48675232)
chr1 (392-441)||(48675483-48675532)
chr1 (19-168)||(22068491-22068639)
[»] chr5 (3 HSPs)
chr5 (392-443)||(36199113-36199164)
chr5 (124-184)||(36199394-36199454)
chr5 (19-62)||(36199516-36199560)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 821574 - 821274
Alignment:
Q  15 ataatacttacataatcatatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgt 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  821574 ataatacttacataatcgtatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcagattgt 821475  T
Q  115 ttattgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821474 ttattgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaa 821375  T
Q  215 agtcccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggatagagccaatagtgcattctaatgttgccaattaacttctg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821374 agtcccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggatagagccaatagtgcattctaatgttgccaattaacttctg 821275  T
Q  315 t 315  Q
    |    
T  821274 t 821274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 274
Target Start/End: Original strand, 973652 - 973875
Alignment:
Q  51 tgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcatagtttctaaaact 150  Q
    |||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||| || ||||| |||||||||||||| ||||||||| |||||||    
T  973652 tgaaagctgacatgttgcagaagcctttgggcatggagataattgactttctatatcagatcgtttactgttgctccagattttcatagtttgtaaaact 973751  T
Q  151 ctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggtttaatgaaa 250  Q
    || || |||| |||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||| ||| ||    
T  973752 cttgcgttctccagaataaatcttgctaacataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgtaaggtttgatgtaa 973851  T
Q  251 cgcaacttggaacagatttcggat 274  Q
      |||||||||||| |||| ||||    
T  973852 gacaacttggaacaaattttggat 973875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 957809 - 957945
Alignment:
Q  138 agtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgta 237  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  957809 agtttctaaaactctcgcattcttcagaataaataatgctaaaataagatgattactttgttggcctgcaagtgcaaagtcccgcatagtgcaagttgta 957908  T
Q  238 aggtttaatgaaacgcaacttggaacagatttcggat 274  Q
    ||||||||||||| |||||||||||| ||||| ||||    
T  957909 aggtttaatgaaaggcaacttggaactgatttaggat 957945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 410693 - 410469
Alignment:
Q  40 tatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcatag 139  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||  |||||| | ||||||| || | | ||||| ||||||| | |||| |||||||    
T  410693 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 410594  T
Q  140 tttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaag 239  Q
    ||  ||||||||| |||||||| ||||||||| |||||||||||||||||  |  |||| ||||||||| ||| |||||||| |||||||||||||||||    
T  410593 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaagttgtaag 410494  T
Q  240 gtttaatgaaacgcaacttggaaca 264  Q
    |||||| |||| ||||  |||||||    
T  410493 gtttaacgaaaagcaaggtggaaca 410469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 965166 - 965300
Alignment:
Q  130 attgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgc 229  Q
    |||| |||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| |||||||||||||  ||||||||||| ||||||||    
T  965166 attgacatagtttctaaaactcttgcattctccagaataaatcttgctagcataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgc 965265  T
Q  230 aagttgtaaggtttaatgaaacgcaacttggaaca 264  Q
    |||||||||||||| ||| ||  ||||||||||||    
T  965266 aagttgtaaggtttgatgtaagacaacttggaaca 965300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 126 - 268
Target Start/End: Complemental strand, 1400142 - 1400003
Alignment:
Q  126 ccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcata 225  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||  |||||||||||||| |||||| |||||||||| ||    ||||||||||||||    
T  1400142 ccagattggcatagtttctaaaactcttgcattctgcagaataaaccttgctaacataatgcgattacgttgttggccttca---tcaaagtcccgcata 1400046  T
Q  226 gtgcaagttgtaaggtttaatgaaacgcaacttggaacagatt 268  Q
     ||||||||||||||||||||||||  ||||||||||||||||    
T  1400045 ttgcaagttgtaaggtttaatgaaagacaacttggaacagatt 1400003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 126 - 268
Target Start/End: Complemental strand, 1403863 - 1403721
Alignment:
Q  126 ccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcata 225  Q
    |||||||| |||||||||||||||||| ||||| | |||||||||  |||||||||||||| ||||||  |||||| || |||   ||||||||||||||    
T  1403863 ccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgcata 1403764  T
Q  226 gtgcaagttgtaaggtttaatgaaacgcaacttggaacagatt 268  Q
     |||||||||||||||||||||||| |||||||||||| ||||    
T  1403763 ttgcaagttgtaaggtttaatgaaaggcaacttggaactgatt 1403721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 821215 - 821144
Alignment:
Q  374 ggattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcaccc 445  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  821215 ggattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggcaatggtggagcaccc 821144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 410320 - 410252
Alignment:
Q  375 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcac 443  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  410320 gattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggcaatggtggagcac 410252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 965465 - 965533
Alignment:
Q  375 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcac 443  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  965465 gattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcac 965533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 974016 - 974079
Alignment:
Q  380 ttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcac 443  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  974016 ttaaatttaacaaacaaacctgataaaggtcaagattttgaagcttagggcaatgatggagcac 974079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 982091 - 982154
Alignment:
Q  386 ttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcacccgtac 449  Q
    |||||||||||||||||||||| |||||||||||||| |||  ||||||||||||||| |||||    
T  982091 ttaacaaacaaacctgataaaggtcaagattttgaagcttaaagcaatggtggagcactcgtac 982154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 963629 - 963578
Alignment:
Q  392 aacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcac 443  Q
    |||||||||||||||| || |||||||||||||||||||| |||| ||||||    
T  963629 aacaaacctgataaagctcgagattttgaagtttagggcagtggtagagcac 963578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 989773 - 989823
Alignment:
Q  393 acaaacctgataaagttcaagattttgaagtttagggcaatggtggagcac 443  Q
    |||||||||||||||||  ||||||||||| |||||||| |||||||||||    
T  989773 acaaacctgataaagttggagattttgaagcttagggcagtggtggagcac 989823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 442
Target Start/End: Complemental strand, 824948 - 824884
Alignment:
Q  375 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagca 442  Q
    |||||||||||||||   ||||||| |||||||||||||||| ||||| |||||| | ||||||||||    
T  824948 gattcttaaacttaa---acaaacccgataaagttcaagattctgaagcttagggaagtggtggagca 824884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 1399595 - 1399555
Alignment:
Q  403 taaagttcaagattttgaagtttagggcaatggtggagcac 443  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  1399595 taaaattcaagattttgaagcttagggcaatggtggagcac 1399555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 45810093 - 45810349
Alignment:
Q  19 tacttacataatcatatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttat 118  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||| |  ||||||||| | |  ||||      
T  45810093 tacttacata-tcatatatgttatcaataaattgaaagttgacattttgcagaagcccttggacatgaagataatagtttttctattttagaccgttttc 45810191  T
Q  119 tgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtc 218  Q
    || ||| ||| ||||||||||||||||||||| | |||||||||||||||||  ||||||||||||  ||||||| ||||  |||||||| |||||||||    
T  45810192 tgctgcaccaaattgtcatagtttctaaaacttttgcattcttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtc 45810291  T
Q  219 ccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggatag 276  Q
    ||||||||||||||| || ||||||||||||| |||| ||||||||||||| ||||||    
T  45810292 ccgcatagtgcaagtcgtgaggtttaatgaaaggcaagttggaacagattttggatag 45810349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 45 - 274
Target Start/End: Complemental strand, 12105718 - 12105489
Alignment:
Q  45 ataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcatagtttct 144  Q
    ||||| |||||||||||||||||||||||| ||||  || |  | |||||| |||||||||||| | |||||   |  || |||||||| |||| |||||    
T  12105718 ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgacatattttct 12105619  T
Q  145 aaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggttta 244  Q
    |||||| | | |||||||||||||||| |||||||||||||||||| ||  ||| ||||| ||| ||||||||| || || || |||||| ||||||||     
T  12105618 aaaactgttgaattcttcagaataaattttgctaacataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtttg 12105519  T
Q  245 atgaaacgcaacttggaacagatttcggat 274  Q
    |||||| ||||| |||||||||||| ||||    
T  12105518 atgaaaggcaacctggaacagattttggat 12105489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 248
Target Start/End: Original strand, 28449405 - 28449617
Alignment:
Q  33 tatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagatt 132  Q
    |||| |||||||||||| |||||||||||| ||||  || |||||||| ||||  ||||||   |||||||||| |  |||||  || |  ||||| ||     
T  28449405 tatacgttatcaataaactgaaagttgacaagttgtggatgcccttggacatgaggataattccctttctatttgaggttgttctttatcactccatatc 28449504  T
Q  133 gtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaag 232  Q
     |||| |||| ||||||||| ||||| || |||||| || |||||| |||||||| |||   |||| || || ||| |||||||||||| ||||||||||    
T  28449505 atcatggtttgtaaaactcttgcattattaagaatatatcttgctagcataatgtcatt---ttgtaggtctacaaatgcaaagtcccgaatagtgcaag 28449601  T
Q  233 ttgtaaggtttaatga 248  Q
    ||||||| | ||||||    
T  28449602 ttgtaagatgtaatga 28449617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 1459328 - 1459390
Alignment:
Q  380 ttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagca 442  Q
    ||||| |||| |||||||||||||||||||||||| ||||||| || ||||||| ||||||||    
T  1459328 ttaaaattaagaaacaaacctgataaagttcaagagtttgaagcttggggcaatcgtggagca 1459390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 1446010 - 1446078
Alignment:
Q  375 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcac 443  Q
    |||| ||||| |||| |||||||||||||||| ||||| ||||||||| ||||||||| ||| ||||||    
T  1446010 gattgttaaaattaagaaacaaacctgataaaattcaatattttgaagcttagggcaaaggtagagcac 1446078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 1459135 - 1459188
Alignment:
Q  216 gtcccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagattt 269  Q
    |||||||| |||||||||||||||||||||| ||| ||||  ||||||||||||    
T  1459135 gtcccgcaaagtgcaagttgtaaggtttaataaaaggcaagatggaacagattt 1459188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 442
Target Start/End: Complemental strand, 12105339 - 12105272
Alignment:
Q  375 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagca 442  Q
    |||| ||||| |||| |||||||||||| |||| |||||||||||||| ||||| ||| |||| ||||    
T  12105339 gattgttaaatttaagaaacaaacctgaaaaaggtcaagattttgaagcttaggacaaaggtgcagca 12105272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 1333502 - 1333546
Alignment:
Q  392 aacaaacctgataaagttcaagattttgaagtttagggcaatggt 436  Q
    |||||||||||| |||||||||  ||||||| |||||||||||||    
T  1333502 aacaaacctgatcaagttcaagcctttgaagcttagggcaatggt 1333546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 28449797 - 28449841
Alignment:
Q  392 aacaaacctgataaagttcaagattttgaagtttagggcaatggt 436  Q
    |||||||||||||||| ||||| |||||||| ||||| |||||||    
T  28449797 aacaaacctgataaagctcaagcttttgaaggttaggacaatggt 28449841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 10116363 - 10116604
Alignment:
Q  19 tacttacataatcatatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttat 118  Q
    |||||||||||||||||||||| | |||    |||||||| |||||||| |||||||||||| ||||  |||||    |||||||||| | |  ||||      
T  10116363 tacttacataatcatatatgtttttaat----tgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagaccgtttcc 10116458  T
Q  119 tgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtc 218  Q
     |   | |||||||| ||||||||||||||||||||||||||  ||||||||  | |||| ||||||||||| ||| ||| |||||| || | |||| ||    
T  10116459 cgcaacaccagattgacatagtttctaaaactctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattc 10116558  T
Q  219 ccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaaca 264  Q
    ||||||||| ||||||||||||||| ||||||  |||| |||||||    
T  10116559 ccgcatagtacaagttgtaaggtttgatgaaagacaacctggaaca 10116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 10116747 - 10116815
Alignment:
Q  375 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcac 443  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10116747 gattgttaaatttaacaaacaaacctgataaagttcaagattttgaaggttagggcaatggtggagcac 10116815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 48675085 - 48675232
Alignment:
Q  38 gttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcat 137  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||||  ||||||   |||||||||| |  ||| |  |||| |||||| ||||||||    
T  48675085 gttatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcat 48675184  T
Q  138 agtttctaaaactctcgcattcttcagaataaatattgctaacataat 185  Q
    ||||| ||||||| | ||||| || |||||| || |||||||||||||    
T  48675185 agtttgtaaaacttttgcattatttagaatatatcttgctaacataat 48675232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 48675483 - 48675532
Alignment:
Q  392 aacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 441  Q
    |||||||||||||||| || |||||||||||||||||||| |||||||||    
T  48675483 aacaaacctgataaagctcgagattttgaagtttagggcagtggtggagc 48675532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 22068639 - 22068491
Alignment:
Q  19 tacttacataatcatatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttat 118  Q
    |||||||||| || || ||| ||||| |||| | |||||| |||||||| ||||||| ||||||||| ||| |||   ||||||||||||  ||||| |     
T  22068639 tacttacatagtc-taaatgctatcactaaactaaaagttcacatgttgtagaagcctttgggcatgcagacaattttctttctatttcaggttgttcac 22068541  T
Q  119 tgttgctccagattgtcatagtttctaaaactctcgcattcttcagaata 168  Q
    |  ||||||| ||| ||||  ||||||||  ||||| |||||||| ||||    
T  22068540 ttctgctccaaattatcatgatttctaaatttctcgaattcttcaaaata 22068491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 36199164 - 36199113
Alignment:
Q  392 aacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcac 443  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||| |||||    
T  36199164 aacaaacctggtaaagttcaagaatttgaagtttagggcagtggtgaagcac 36199113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 36199454 - 36199394
Alignment:
Q  124 ctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataa 184  Q
    ||||| ||||||||||||| ||||||||| ||||| || |||||| || ||||||||||||    
T  36199454 ctccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 36199394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 36199560 - 36199516
Alignment:
Q  19 tacttacata-atcatatatgttatcaataaaatgaaagttgaca 62  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  36199560 tacttacatatatcttatatgttatcaataaactgaaagttgaca 36199516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University