View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_18 (Length: 412)
Name: NF16256_low_18
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 209 - 397
Target Start/End: Original strand, 53794003 - 53794191
Alignment:
| Q |
209 |
ttggtgtcagacgtagttagtcccacgttaactaaaaatgacctaaatgaaaaatatataagagggtgattcgtcgttgttgctactggaccgacttgca |
308 |
Q |
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| T |
53794003 |
ttggtgtcagacgtagttagtcccacgttaactaaaaatgacctaaatgaaagatatataagagggtgattcgtcgttgttgctactggaccgacttgca |
53794102 |
T |
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| Q |
309 |
ttaatagcttataatataaatttccttttattgtattaggtattgatgggattaagcttaaagatggtcgtctattgattgcatataat |
397 |
Q |
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| T |
53794103 |
ttaatagcttataatataaatttccttttattgtattaggtattgatgggattaagcttaaagatggtcgtctattgattgcatataat |
53794191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 53793799 - 53793968
Alignment:
| Q |
13 |
atcatcatatgacaagtaaaaattcttaagtgagttttcctatgtgttatgtgctatactaagatgtgtattttttaatatcctcatgtgttggaaaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53793799 |
atcatcatatgacaagtaaaaattcttaagtgagttttcctatgtgttatgtgctacactaagatgtgtattttttaatatcctcatgtgttggaaaatg |
53793898 |
T |
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| Q |
113 |
tgaatagtcagtcttacatcgactaagaattgactaaacgagtcatatataagagacatgtgatttacaaga |
184 |
Q |
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| T |
53793899 |
tgaatagtcagtcttacatcgactaagaattgactaaacgagtcatatataagagac--gtgatttacaaga |
53793968 |
T |
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