View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_19 (Length: 409)
Name: NF16256_low_19
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 103 - 397
Target Start/End: Original strand, 53018185 - 53018477
Alignment:
| Q |
103 |
agtggaaagagcggcaggagtattaccagaagaaaaaagttgtctcaaaagagactcaataatttgtgacagacccaatggagtcgggatgagattgatt |
202 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
53018185 |
agtggaaagagcggcaggagcattatcagaagaaaaaagttgtctcaaaagagactcaataatttgtgaca--cccaatggagtcaggatgagattgatt |
53018282 |
T |
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| Q |
203 |
ccgattttgatcagaccgtggaggacgagtgggacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagcaatatgatccttt |
302 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
53018283 |
ccgattttgatcagaccgtggaggacgagtgagacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagtaatatgacccttt |
53018382 |
T |
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| Q |
303 |
ttcatgcagttataacattcaacaataggacaataggagaaagaatgtccaaaactacggcaacgatgacaatattcctccatcgtgaaaattga |
397 |
Q |
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| T |
53018383 |
ttcatgcagttataacattcaacaataggacaataggagaaagaatgtccaaaattacggcaacgatgacaatattcctccatcgtgaaaattga |
53018477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 53008028 - 53008090
Alignment:
| Q |
8 |
attattctggacttgacaaagacacactacagactccactcatattaaaatcttaatttagaatg |
72 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
53008028 |
attactctggacttgacaaagacacgctacagactccactc--attaaaatcttaatttagaatg |
53008090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 183 - 353
Target Start/End: Complemental strand, 16501945 - 16501775
Alignment:
| Q |
183 |
gagtcgggatgagattgattccgattttgatcagaccgtggaggacgagtgggacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaat |
282 |
Q |
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| T |
16501945 |
gagtcgggacgaagttgattcctattttgatcaaatcgtggaggatgagtgggacaattttgaatcaaatgtttggctgtcttgcagtatcgacaacaat |
16501846 |
T |
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| Q |
283 |
ttgaagcaatatgatcctttttcatgcagttataacattcaacaataggacaataggagaaagaatgtcca |
353 |
Q |
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| T |
16501845 |
ttgaagcaatatgaccctttttcaagcaattataacattcaacggtcggacaattagagaaaaaatgtcca |
16501775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 16502083 - 16502007
Alignment:
| Q |
86 |
ttagaattacatggtgtagtggaaagagcggcaggagtattaccagaagaaaaaagttgtctcaaaagagactcaat |
162 |
Q |
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| T |
16502083 |
ttagaattacctggtgtggtagaaagagcggccagagtattaccagaaggaagaagttgtctgagaagagactcaat |
16502007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 23723547 - 23723477
Alignment:
| Q |
231 |
gtgggacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagcaatatgatcctt |
301 |
Q |
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| T |
23723547 |
gtgggacaattttgaatcaagtgtccgactgtcttacaatattggcaacaatttgaagaaatatgaccctt |
23723477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 353
Target Start/End: Original strand, 24433014 - 24433148
Alignment:
| Q |
219 |
cgtggaggacgagtgggacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagcaatatgatcctttttcatgcagttataac |
318 |
Q |
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||||||||||||||||| ||||||||||||||||| || | ||||||| || |||||||| ||||||||||| ||| | |||| ||| || ||| || |
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| T |
24433014 |
cgtggaggacgagtggggcaattttgaatcaagtgccctggactcttgcaataccgacaacagtttgaagcaatgtgacctttttgcatacaattacgac |
24433113 |
T |
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| Q |
319 |
attcaacaataggacaataggagaaagaatgtcca |
353 |
Q |
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|||||| | | || |||| ||||| ||||||||| |
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| T |
24433114 |
attcaatagttgggcaatcagagaaggaatgtcca |
24433148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 353
Target Start/End: Complemental strand, 14824760 - 14824629
Alignment:
| Q |
222 |
ggaggacgagtgggacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagcaatatgatcctttttcatgcagttataacatt |
321 |
Q |
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||||||||||| |||||||| ||||| ||||| || | ||||||||| ||||||||||| ||||| ||||||||| | |||||| ||||||||| ||||| |
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| T |
14824760 |
ggaggacgagtaggacaattctgaattaagtgtccaggtgtcttgcaatatcgacaacagtttgatgcaatatgaccttttttcttgcagttatgacatt |
14824661 |
T |
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| Q |
322 |
caacaataggacaat-aggagaaagaatgtcca |
353 |
Q |
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| ||| | ||||||| |||| |||||||||||| |
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| T |
14824660 |
ctacattgggacaatcagga-aaagaatgtcca |
14824629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 353
Target Start/End: Original strand, 17452063 - 17452197
Alignment:
| Q |
219 |
cgtggaggacgagtgggacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagcaatatgatcctttttcatgcagttataac |
318 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| || | ||||||| || |||||||| ||||||||||| ||| | |||| ||| || ||| || |
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| T |
17452063 |
cgtggaggacgagtggggcaattttgaatcaagtgccctggactcttgcaataccgacaacagtttgaagcaatgtgacctttttgcatacaattacgac |
17452162 |
T |
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| Q |
319 |
attcaacaataggacaataggagaaagaatgtcca |
353 |
Q |
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|||||| | | || |||| ||||| ||||||||| |
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| T |
17452163 |
attcaatagttgggcaatcagagaaggaatgtcca |
17452197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 24658283 - 24658192
Alignment:
| Q |
232 |
tgggacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagcaatatgatcctttttcatgcagttataacattcaa |
324 |
Q |
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|||||||||||||||||||||| || ||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |
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| T |
24658283 |
tgggacaattttgaatcaagtgcccaactgtcttacaatatcgacaacaatttgaagcaaaatg-gcctttttcatgcagttataacgttcaa |
24658192 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 323
Target Start/End: Complemental strand, 12543990 - 12543855
Alignment:
| Q |
188 |
gggatgagattgattccgattttgatcagaccgtggaggacgagtgggacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaa |
287 |
Q |
| |
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|||| ||||||||||| ||| |||||||| ||| ||||||||||| |||||| ||||||||||| ||| ||||| | || |||||||||||||||||| |
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| T |
12543990 |
gggacgagattgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaa |
12543891 |
T |
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| Q |
288 |
gcaatatgatcctttttcatgcagttataacattca |
323 |
Q |
| |
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||||||| ||||||||| || ||||| |||||| |
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| T |
12543890 |
ataatatgaccctttttcaaacaattatagcattca |
12543855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 315
Target Start/End: Original strand, 3084124 - 3084217
Alignment:
| Q |
222 |
ggaggacgagtgggacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagcaatatgatcctttttcatgcagttat |
315 |
Q |
| |
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||||||||||| |||||||| ||||| ||||| || || ||||||| ||| |||||| ||||||||||||||| ||||| |||||||||||| |
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| T |
3084124 |
ggaggacgagtaggacaattctgaattaagtgtttgggtgacttgcagcatcaacaacagtttgaagcaatatgaccctttctcatgcagttat |
3084217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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