View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_20 (Length: 409)
Name: NF16256_low_20
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 3236236 - 3235850
Alignment:
| Q |
1 |
ttgcttaacattaacctaaggctcaataatgtgaaatttatgcaaggaaaaatggattttggcattagtttggcaatgttaatagtaaaaaccatatgca |
100 |
Q |
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| T |
3236236 |
ttgcttaacattaacctaaggctcaataatgtgaaatttatgcaaggaaaaatggattttggcattagtttggcaatgttaatagtaaaaaccatatgca |
3236137 |
T |
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| Q |
101 |
tagcctcaatattaaggacctagggaatgaaagaaatcaaatagagcaaggtgttaaaatttccatgttgtttagtatcatagttcattttgagaaaaat |
200 |
Q |
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| T |
3236136 |
tagcctcaatattaaggacctagggaatgaaagaaatcaaatagagcaaggtgttaaaatttccatgttgtttagtatcatagttcattttgagaaaaat |
3236037 |
T |
|
| Q |
201 |
caaatttgttgctaacaaggtcaaggtgggagaaaaacattgagaagggacacatagaattgcttgtataagtgtgattcagatttcaaagtgaagtttt |
300 |
Q |
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| T |
3236036 |
caaatttgttgctaacaaggtcaaggtgggagaaaaacattgagaagggacacatagaattgcttgtataagtgtgattcagatttcaaagtgaagtttt |
3235937 |
T |
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| Q |
301 |
gaagaaaattcttgaagtcaagaattgggttcatcaacatatgnnnnnnnnncttttccggaaattatttcgacatatgttgttgat |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
3235936 |
gaagaaaattcttgaagtcaagaattgggttcatcaacataagtttttttttgttttccggaaattatttcgacatatgttgttgat |
3235850 |
T |
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