View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_21 (Length: 407)
Name: NF16256_low_21
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 2047465 - 2047630
Alignment:
| Q |
34 |
attgttgtatttttaaagttgaatttaaatctgctttannnnnnngaagaaattgatgatttcatttacatattgtagaaaaatatattagacattggac |
133 |
Q |
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| T |
2047465 |
attgttgtatttttaaagttgaatttaaatccactttatttttt-gaagaaattgatgatttcatttacatattgtagaaaaatatattagacattggat |
2047563 |
T |
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| Q |
134 |
ccatccatcaatcttattaatgtatcacaatttgtctacttattttttgaattcaaatgatcaactc |
200 |
Q |
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| T |
2047564 |
ccatccatcaatctttttaatgtatcacaatttgtctacttattttttgaattcaaatgatcaactc |
2047630 |
T |
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Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 299 - 389
Target Start/End: Original strand, 2047729 - 2047819
Alignment:
| Q |
299 |
tgatataacttttttgtttgaaaacatagaaggaattcgcataaactaccactaacccactattgagtagcgagttactctcttttggtaa |
389 |
Q |
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| T |
2047729 |
tgatataacttttttgtttgaaaacatagaaggaattcgcataaactaccactaacccactattgagtagcgagttactctcttttggtaa |
2047819 |
T |
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