View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16256_low_22 (Length: 404)

Name: NF16256_low_22
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16256_low_22
NF16256_low_22
[»] chr6 (5 HSPs)
chr6 (1-398)||(5252283-5252684)
chr6 (89-145)||(1744831-1744891)
chr6 (48-91)||(12134544-12134587)
chr6 (89-145)||(15101100-15101160)
chr6 (89-145)||(24055098-24055158)
[»] chr4 (18 HSPs)
chr4 (85-149)||(50858063-50858131)
chr4 (89-145)||(12016672-12016732)
chr4 (89-145)||(12016880-12016940)
chr4 (48-91)||(15665153-15665196)
chr4 (89-145)||(29669352-29669412)
chr4 (89-145)||(32987460-32987520)
chr4 (89-145)||(43943728-43943788)
chr4 (1-44)||(43972284-43972327)
chr4 (89-145)||(45427241-45427301)
chr4 (48-91)||(51469481-51469524)
chr4 (89-145)||(51469536-51469596)
chr4 (89-145)||(52214670-52214730)
chr4 (89-145)||(53740237-53740297)
chr4 (89-144)||(43972410-43972469)
chr4 (54-91)||(51470489-51470526)
chr4 (89-146)||(23018525-23018586)
chr4 (89-146)||(28395232-28395293)
chr4 (92-145)||(36558455-36558512)
[»] chr5 (8 HSPs)
chr5 (45-91)||(38131761-38131807)
chr5 (46-91)||(14769893-14769938)
chr5 (89-145)||(48300-48360)
chr5 (48-91)||(873757-873800)
chr5 (48-91)||(27760075-27760118)
chr5 (89-146)||(2716601-2716661)
chr5 (92-145)||(12965235-12965292)
chr5 (85-146)||(27760426-27760491)
[»] chr8 (6 HSPs)
chr8 (48-145)||(36993936-36994036)
chr8 (89-145)||(18905911-18905971)
chr8 (89-145)||(32931456-32931516)
chr8 (89-145)||(36997221-36997281)
chr8 (46-83)||(17607283-17607320)
chr8 (84-133)||(21653854-21653907)
[»] chr7 (2 HSPs)
chr7 (89-145)||(1663593-1663653)
chr7 (48-91)||(7135304-7135347)
[»] chr3 (9 HSPs)
chr3 (89-145)||(22407430-22407490)
chr3 (89-145)||(22407637-22407697)
chr3 (89-145)||(44573694-44573754)
chr3 (89-145)||(44573991-44574051)
chr3 (48-91)||(54369039-54369082)
chr3 (89-147)||(22339796-22339858)
chr3 (48-89)||(47833725-47833766)
chr3 (54-91)||(50203918-50203955)
chr3 (89-146)||(51642416-51642477)
[»] chr2 (12 HSPs)
chr2 (89-145)||(20998978-20999038)
chr2 (89-145)||(21214190-21214250)
chr2 (89-145)||(34775412-34775472)
chr2 (89-145)||(42768323-42768383)
chr2 (89-145)||(43195839-43195899)
chr2 (49-91)||(43688482-43688524)
chr2 (54-91)||(936818-936855)
chr2 (54-91)||(28193396-28193433)
chr2 (88-145)||(883904-883965)
chr2 (89-142)||(11969107-11969164)
chr2 (89-146)||(23054381-23054442)
chr2 (100-145)||(25621274-25621323)
[»] chr1 (7 HSPs)
chr1 (48-91)||(2697392-2697435)
chr1 (48-91)||(4022186-4022229)
chr1 (89-145)||(20735577-20735637)
chr1 (89-146)||(4022113-4022174)
chr1 (85-146)||(8520081-8520146)
chr1 (89-146)||(19937031-19937092)
chr1 (100-145)||(43361746-43361795)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 5252684 - 5252283
Alignment:
Q  1 cgcctaaattgcagcctttgatttgcctttattgcagtctccaaggagtggacttagtctcacatcggatagataggactcttcagaagaggcactccgc 100  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5252684 cgcctaaattgcagcctttgatatgccttcattgcagtctccaaggagtggacttagtctcacatcggatagataggactcttcagaagaggcactccgc 5252585  T
Q  101 accttacaagccgggtaaggatgagttaggccctcaatttcaacacggtcgtcataaatttaccctgatgtggacttttggacgcgacaaagttagtttc 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5252584 accttacaagccgggtaaggatgagttgggccctcaatttcaacacggtcgtcataaatttaccctgatgtggacttttggatgcgacaaagttagtttc 5252485  T
Q  201 ----nnnnnnnnnncttttcaaatgtgtacatttgaactcagtgtttctgtcacattatattttttagagggtggggcagaaaatttggcttgcatatga 296  Q
                  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5252484 ttttttttccttttcttttcaaatgtgtacatttgaactcattgtttctgtcacattatattttttagagggtggtgcagaaaatttggcttgcatatga 5252385  T
Q  297 aacatggctagttatgttatgttgcagtgcataaataggctaacttctctttcaacaacattcttgtgtataatggttggctagttagatttaattgagt 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5252384 aacatggctagttatgttatgttgcagtgcataaataggctaacttctctttcaacaacattcttgtgtataatggttggctagttagatttaattgagt 5252285  T
Q  397 at 398  Q
    ||    
T  5252284 at 5252283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 1744891 - 1744831
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  1744891 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 1744831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 12134587 - 12134544
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    |||||||||||| |||||||||||||||| |||||| |||||||    
T  12134587 gtggacttagtcccacatcggatagatagcactcttgagaagag 12134544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 15101160 - 15101100
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||| ||| |||||||||||||||    ||||||||||||||||||| |||||||||||    
T  15101160 gaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaaca 15101100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 24055158 - 24055098
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  24055158 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 24055098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 50858063 - 50858131
Alignment:
Q  85 agaagaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacacggt 149  Q
    |||||||| ||||| |||||||||||||||    |||||||||||||||||||  ||||||||||||||    
T  50858063 agaagaggtactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacacggt 50858131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 12016732 - 12016672
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||| ||| |||||||||||||||    ||||||||||||||||||| |||||||||||    
T  12016732 gaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaaca 12016672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 12016940 - 12016880
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||| ||| |||||||||||||||    ||||||||||||||||||| |||||||||||    
T  12016940 gaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaaca 12016880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 15665153 - 15665196
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||    
T  15665153 gtggatttagtcccacatcggatagataggactcttgagaagag 15665196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 29669412 - 29669352
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  29669412 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 29669352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 32987520 - 32987460
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||||||||||||||| |||    |||||||||| ||||||||| ||||||||||    
T  32987520 gaggcactccgcaccttacaagtcggttttgtaaggatgatttaggccctaaatttcaaca 32987460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 43943728 - 43943788
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||| ||| |||||||||||||||    ||||||||||||||||||| |||||||||||    
T  43943728 gaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaaca 43943788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43972284 - 43972327
Alignment:
Q  1 cgcctaaattgcagcctttgatttgcctttattgcagtctccaa 44  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||    
T  43972284 cgcctaaattgcggcctttgatttgccttcattgcagcctccaa 43972327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 45427301 - 45427241
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  45427301 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 45427241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 51469481 - 51469524
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||    
T  51469481 gtggatttagtcccacatcggatagataggactcttgagaagag 51469524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 51469536 - 51469596
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  51469536 gaggcactcctcaccttacaagccggttgtgtaaggatgagttaggccccaaatttcaaca 51469596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 52214670 - 52214730
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  52214670 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 52214730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 53740237 - 53740297
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  53740237 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 53740297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 43972410 - 43972469
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaac 144  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  |||||||||    
T  43972410 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaac 43972469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 51470489 - 51470526
Alignment:
Q  54 ttagtctcacatcggatagataggactcttcagaagag 91  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  51470489 ttagtcccacatcggatagataggactcttgagaagag 51470526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 23018525 - 23018586
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacac 146  Q
    |||||| ||| |||||||||||||||    |||||||||||||||||||  |||||||||||    
T  23018525 gaggcattcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacac 23018586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 28395232 - 28395293
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacac 146  Q
    |||||| ||| |||||||||||||||    |||||||||||||||||||  |||||||||||    
T  28395232 gaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacac 28395293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 36558512 - 36558455
Alignment:
Q  92 gcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    ||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  36558512 gcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 36558455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 38131761 - 38131807
Alignment:
Q  45 ggagtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||    
T  38131761 ggagtggatttagtcccacatcggatagataggactcttgagaagag 38131807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 14769938 - 14769893
Alignment:
Q  46 gagtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||||| ||||||||||||||||||||||||| |||| |||||||    
T  14769938 gagtggatttagtctcacatcggatagataggattcttgagaagag 14769893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 48360 - 48300
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||| ||| |||||||||||||||    ||||||||||||||||||| |||||||||||    
T  48360 gaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaaca 48300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 873800 - 873757
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||    
T  873800 gtggatttagtcccacatcggatagataggactcttgagaagag 873757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 27760075 - 27760118
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||    
T  27760075 gtggatttagtcccacatcggatagataggactcttgagaagag 27760118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 2716601 - 2716661
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacac 146  Q
    |||||||||| ||||||| |||||||    ||||||||||||||||||| ||||||||||||    
T  2716601 gaggcactcctcaccttataagccggttttgtaaggatgagttaggccc-caatttcaacac 2716661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 12965292 - 12965235
Alignment:
Q  92 gcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    ||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  12965292 gcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 12965235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 27760426 - 27760491
Alignment:
Q  85 agaagaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacac 146  Q
    |||||||||||||| |||||| ||||||||    ||||||||||||||| |||  |||||||||||    
T  27760426 agaagaggcactcctcaccttccaagccggttttgtaaggatgagttagaccccaaatttcaacac 27760491  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 36994036 - 36993936
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaagaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaa 143  Q
    ||||| |||||| |||||||| ||||||||||  |  ||| |||||||||| |||||||||||||||    ||||||||||||||||||   ||||||||    
T  36994036 gtggatttagtcccacatcggttagataggaca-taaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggcctcaaatttcaa 36993938  T
Q  144 ca 145  Q
    ||    
T  36993937 ca 36993936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 18905911 - 18905971
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  18905911 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 18905971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 32931456 - 32931516
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  32931456 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 32931516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 36997221 - 36997281
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  36997221 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 36997281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 17607320 - 17607283
Alignment:
Q  46 gagtggacttagtctcacatcggatagataggactctt 83  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  17607320 gagtggatttagtctcacatcggatagataggattctt 17607283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 21653854 - 21653907
Alignment:
Q  84 cagaagaggcactccgcaccttacaagccgg----gtaaggatgagttaggccc 133  Q
    |||| |||||||||| |||||||||||||||    |||||||||||||||||||    
T  21653854 cagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccc 21653907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 1663653 - 1663593
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  1663653 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 1663593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 7135347 - 7135304
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||    
T  7135347 gtggatttagtcacacatcggatagataggactcttgagaagag 7135304  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 22407490 - 22407430
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  22407490 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 22407430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 22407697 - 22407637
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  22407697 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 22407637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 44573694 - 44573754
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  44573694 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 44573754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 44573991 - 44574051
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  44573991 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 44574051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 54369039 - 54369082
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||    
T  54369039 gtggatttagtcccacatcggatagataggactcttgagaagag 54369082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 22339796 - 22339858
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacacg 147  Q
    |||||| ||| ||||||||||| |||    ||||||||||||||||||| |||||||||||||    
T  22339796 gaggcaatcctcaccttacaagtcggttttgtaaggatgagttaggcccccaatttcaacacg 22339858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 47833766 - 47833725
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaag 89  Q
    ||||| |||||| ||||||||||||||||||||||| |||||    
T  47833766 gtggatttagtcccacatcggatagataggactcttgagaag 47833725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 50203955 - 50203918
Alignment:
Q  54 ttagtctcacatcggatagataggactcttcagaagag 91  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  50203955 ttagtctcacatcggatagataagactcttgagaagag 50203918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 51642477 - 51642416
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacac 146  Q
    |||||| ||| |||||||||||||||    |||||||||||||||||||  |||||||||||    
T  51642477 gaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacac 51642416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 20999038 - 20998978
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||| ||| |||||||||||||||    ||||||||||||||||||| |||||||||||    
T  20999038 gaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaaca 20998978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 21214250 - 21214190
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  21214250 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 21214190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 34775412 - 34775472
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||| ||| |||||||||||||||    ||||||||||||||||||| |||||||||||    
T  34775412 gaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaaca 34775472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 42768383 - 42768323
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  42768383 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 42768323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 43195839 - 43195899
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  43195839 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 43195899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 43688524 - 43688482
Alignment:
Q  49 tggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    |||| ||| |||||||||||||||||||||||||| |||||||    
T  43688524 tggatttaatctcacatcggatagataggactcttgagaagag 43688482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 936818 - 936855
Alignment:
Q  54 ttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  936818 ttagtctcacatcggatagataggaatcttgagaagag 936855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 28193433 - 28193396
Alignment:
Q  54 ttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  28193433 ttagtctcacatcggatagataggattcttgagaagag 28193396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 883904 - 883965
Alignment:
Q  88 agaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    ||||||| ||| |||||||||||||||    ||||||||||||||||||| |||||| ||||    
T  883904 agaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaattttaaca 883965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 11969107 - 11969164
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttca 142  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  |||||||    
T  11969107 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggcccaaaatttca 11969164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 23054381 - 23054442
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacac 146  Q
    |||||||||| ||||||||||| |||    |||||||||||||||||||  |||||||||||    
T  23054381 gaggcactcctcaccttacaagacggttttgtaaggatgagttaggccccaaatttcaacac 23054442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 25621323 - 25621274
Alignment:
Q  100 caccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||||||||    ||||||||||||||||||| |||||||||||    
T  25621323 caccttacaagccggttttgtaaggatgagttaggcccccaatttcaaca 25621274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 2697435 - 2697392
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||    
T  2697435 gtggatttagtcccacatcggatagataggactcttgagaagag 2697392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 4022229 - 4022186
Alignment:
Q  48 gtggacttagtctcacatcggatagataggactcttcagaagag 91  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||    
T  4022229 gtggatttagtcccacatcggatagataggactcttgagaagag 4022186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 20735577 - 20735637
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||| |||||||||||||||    |||||||||||||||||||  ||||||||||    
T  20735577 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 20735637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 4022174 - 4022113
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacac 146  Q
    |||||||||| ||||||||||||| |    |||||||||||||||||||  |||||||||||    
T  4022174 gaggcactcctcaccttacaagccagttttgtaaggatgagttaggccccaaatttcaacac 4022113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 8520146 - 8520081
Alignment:
Q  85 agaagaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacac 146  Q
    |||||||||||||| |||||||||||||||    |||| |||||||||| |||  |||||||||||    
T  8520146 agaagaggcactcctcaccttacaagccggttttgtaaagatgagttagaccccaaatttcaacac 8520081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 19937092 - 19937031
Alignment:
Q  89 gaggcactccgcaccttacaagccgg----gtaaggatgagttaggccctcaatttcaacac 146  Q
    |||||||||| |||||||||||||||    ||||||||||||||||| |  |||||||||||    
T  19937092 gaggcactcctcaccttacaagccggttttgtaaggatgagttaggcaccgaatttcaacac 19937031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 43361795 - 43361746
Alignment:
Q  100 caccttacaagccgg----gtaaggatgagttaggccctcaatttcaaca 145  Q
    |||||||||||||||    ||||||||||||||| |||||||||||||||    
T  43361795 caccttacaagccggttttgtaaggatgagttagaccctcaatttcaaca 43361746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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