View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_24 (Length: 385)
Name: NF16256_low_24
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_24 |
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| [»] scaffold0241 (1 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 18463424 - 18463784
Alignment:
| Q |
17 |
actattaccactaatcaaggatctgtt--cacaagatagaaaatggtacaattttctaatcaaacaagatttgaactgttagtttcgacaccatattacg |
114 |
Q |
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|||||| ||||| |||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||| | |
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| T |
18463424 |
actatttccacttatcaaggatcagtttacacaagacagaaaatggtacaattttccaatcaaacaagattcaaactgttaacttcgacactatattatg |
18463523 |
T |
|
| Q |
115 |
ctcaagcaaatggccaagtcgaagcaaccaacaaaattattatcactttaattaaaaagcagataaagtataaaccaaagagttggcataaaatcattga |
214 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
18463524 |
ctcaagcaaatggtcaagtcgaagcaagcaacaaaattattatcactttaattaaaaagaagataaaggataaaccaaagagttggcataaaatcattga |
18463623 |
T |
|
| Q |
215 |
taaagctttatgggcttgtcgaaactcacctagagagtcgaccaatactactccttttagacgtacatttggacatgatgttgtgttgcctgtagagatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18463624 |
taaagctttatgggcttgtcgaaactcacctagagagtcgaccaatactactccttttagacgtacatttggacatgatgttgtgttgcctgtagagatt |
18463723 |
T |
|
| Q |
315 |
tttctttaatagaccaggaaccaagacagattgaaattcttgctgatcattattggaatat |
375 |
Q |
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| |||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
18463724 |
tgtcttcaatagaccaggatccaagacagattgaaattcttgttgatcattattggaatat |
18463784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 24254647 - 24254593
Alignment:
| Q |
98 |
ttcgacaccatattacgctcaagcaaatggccaagtcgaagcaaccaacaaaatt |
152 |
Q |
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| T |
24254647 |
ttcgacaccacattatgctcaagcaaatggtcaagtcgaagctgccaataaaatt |
24254593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 14163381 - 14163329
Alignment:
| Q |
88 |
aactgttagtttcgacaccatattacgctcaagcaaatggccaagtcgaagca |
140 |
Q |
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| T |
14163381 |
aactgttaacttcgacaccatattatgcccaagcaaatggtcaagtcggagca |
14163329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 4637574 - 4637693
Alignment:
| Q |
54 |
aaaatggtacaattttctaatcaaacaagatttgaactgttagtttcgacaccatattacgctcaagcaaatggccaagtcgaagcaaccaacaaaatta |
153 |
Q |
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|||||||||| |||| |||| |||||||| || || ||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||| |||| |
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| T |
4637574 |
aaaatggtacgatttgctaaccaaacaagtttcaaattgttaacttcaacaccatattatgctcaagcaaatggtcaagtcgaagcaaccaataaaaacc |
4637673 |
T |
|
| Q |
154 |
ttatcactttaattaaaaag |
173 |
Q |
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| T |
4637674 |
tcatcactttgattaaaaag |
4637693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 22461071 - 22460863
Alignment:
| Q |
98 |
ttcgacaccatattacgctcaagcaaatggccaagtcgaagcaaccaacaaaattattatcactttaattaaaaagcagataaagtataaaccaaagagt |
197 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||| |||| |||| | |||||||| |||| |||| || | | | || |||| || |
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| T |
22461071 |
ttcgacaccatattatgctcaagcaaatggtcaagtcgaagcagccaataaaaacctcatcactttgattagaaagaagttggaagaaaatccaagaggt |
22460972 |
T |
|
| Q |
198 |
tggcataaaatcattgataaagctttatgggcttgtcgaaactcacctagagagtcgaccaatactactccttttagacgtacatttggacatgatgttg |
297 |
Q |
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||||| || | | ||||| ||||| ||||||||| | ||| || ||||||||||| || || || ||||| |||| | ||||||||||||||||||| |
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| T |
22460971 |
tggcacaagaaccttgatcaagctctatgggcttatagaacttcccctagagagtcaactaaaacaactccctttaagctcacatttggacatgatgttg |
22460872 |
T |
|
| Q |
298 |
tgttgcctg |
306 |
Q |
| |
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|||| |||| |
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| T |
22460871 |
tgttacctg |
22460863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 18827 - 18923
Alignment:
| Q |
217 |
aagctttatgggcttgtcgaaactcacctagagagtcgaccaatactactccttttagacgtacatttggacatgatgttgtgttgcctgtagagat |
313 |
Q |
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||||||| ||||| ||||||| || |||| ||| ||||| || ||||| |||||||| | |||||||| ||||||| |||||| ||||||||||| |
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| T |
18827 |
aagctttgtgggcatgtcgaacatctcctaaagaatcgacaaacactacaccttttaggctgacatttggtcatgatgctgtgttacctgtagagat |
18923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 331
Target Start/End: Complemental strand, 128723 - 128609
Alignment:
| Q |
217 |
aagctttatgggcttgtcgaaactcacctagagagtcgaccaatactactccttttagacgtacatttggacatgatgttgtgttgcctgtagagatttt |
316 |
Q |
| |
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||||||| ||||||||||||| || || | ||| ||||| ||||| || |||||||| | |||||||| ||||||| |||||| || ||||||||| | |
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| T |
128723 |
aagctttgtgggcttgtcgaacatctcccaaagaatcgacaaataccacaccttttaggctgacatttggtcatgatgatgtgttaccagtagagattct |
128624 |
T |
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| Q |
317 |
tctttaatagaccag |
331 |
Q |
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||| |||| ||||| |
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| T |
128623 |
gcttcaataaaccag |
128609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 33722 - 33625
Alignment:
| Q |
219 |
gctttatgggcttgtcgaaactcacctagagagtcgaccaatactactccttttagacgtacatttggacatgatgttgtgttgcctgtagagatttt |
316 |
Q |
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||||| ||||| ||||||| ||| || | ||| ||||| || ||||| |||||||| |||||||| |||||||||||||| || ||||||||||| |
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| T |
33722 |
gctttgtgggcatgtcgaacctctcccaaagaatcgacaaacactacgccttttaggttaacatttggtcatgatgttgtgttaccagtagagatttt |
33625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 23196921 - 23196824
Alignment:
| Q |
219 |
gctttatgggcttgtcgaaactcacctagagagtcgaccaatactactccttttagacgtacatttggacatgatgttgtgttgcctgtagagatttt |
316 |
Q |
| |
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||||| ||||| ||||||| || || | ||| ||||| || ||||| |||||||| | |||||||| |||||||||||||| || ||||||||||| |
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| T |
23196921 |
gctttgtgggcatgtcgaacatctcccaaagaatcgacaaacactacaccttttaggctaacatttggtcatgatgttgtgttaccagtagagatttt |
23196824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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