View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_25 (Length: 383)
Name: NF16256_low_25
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_25 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 9 - 369
Target Start/End: Complemental strand, 24721742 - 24721382
Alignment:
| Q |
9 |
gagaagaaagatgtatgggggagggatacaaataaagagaccaatgacaacagaaaatacaatgaaaaataagagagtaatgaccaaaaagaaacatgtt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24721742 |
gagaagaaagatgtatgggggagggatacaaataaagagaccaatgacaacagaaaatacaatgaaaaataagagagtaatgaccaaaaagaaacatgtt |
24721643 |
T |
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| Q |
109 |
tgtttttgaacaatctataaaagaggcgtcgagaaaaatgtaatgctcctaaaaaagagatgtgacatgtatacttgagaaattttgtaagactttcgtt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24721642 |
tgtttttgaacaatctataaaagaggcgtcgagaaaaatgtaatgctcctaaaaaagagatgtgacatgtatacttgagaaattttgtaagacttttgtt |
24721543 |
T |
|
| Q |
209 |
tattataaagcttaacatcatttctgtcctaatggtttccaggtagcctttttctcaaaaaagaaaccgtccaaactttgaagaagtccatctggcctta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24721542 |
tattataaagcttaacatcatttctgtcctaatggtttccaggtagcctttttctcaaaaaagaaaccgtccaaactttgaagaagtccatctggcctta |
24721443 |
T |
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| Q |
309 |
tgagccaaacaacaccatgatgacctatcaatttacttttgggatcaaatgcggtgatagt |
369 |
Q |
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| T |
24721442 |
tgagccaaacaacaccatgatgacctattaatttacttttgggatcaaatgcggtgatagt |
24721382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 369
Target Start/End: Original strand, 12671868 - 12671986
Alignment:
| Q |
251 |
gtagcctttttctcaaaaaagaaaccgtccaaactttgaagaagtccatctggccttatgagccaaacaacaccatgatgacctatcaatttacttttgg |
350 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| | ||||||||||||| |
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| T |
12671868 |
gtagcctttttctcaaaaaagaagttgtccaaactttgaagaagaccatctggccttatgagccaataaacaccgtgatgaccagttaatttacttttgg |
12671967 |
T |
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| Q |
351 |
gatcaaatgcggtgatagt |
369 |
Q |
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|||||||||| |||||||| |
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| T |
12671968 |
gatcaaatgcagtgatagt |
12671986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 369
Target Start/End: Original strand, 12683754 - 12683872
Alignment:
| Q |
251 |
gtagcctttttctcaaaaaagaaaccgtccaaactttgaagaagtccatctggccttatgagccaaacaacaccatgatgacctatcaatttacttttgg |
350 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| | ||||||||||||| |
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| T |
12683754 |
gtagcctttttctcaaaaaagaagttgtccaaactttgaagaagaccatctggccttatgagccaataaacaccgtgatgaccagttaatttacttttgg |
12683853 |
T |
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| Q |
351 |
gatcaaatgcggtgatagt |
369 |
Q |
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|||||||||| |||||||| |
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| T |
12683854 |
gatcaaatgcagtgatagt |
12683872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 28752 - 28609
Alignment:
| Q |
220 |
ttaacatcatttctgtcctaatggtttccaggtagcctttttctcaaaaaagaaaccgtccaaactttgaagaagtccatctggccttatgagccaaaca |
319 |
Q |
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|||| ||||||| |||| | ||||||| | |||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||||||||||||| | |
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| T |
28752 |
ttaagatcatttttgtcttcgtggtttcaatgtagcctttttctcaaaagagaaattgtccaaagtttgaagaagtccatccggccttatgagccaaaaa |
28653 |
T |
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| Q |
320 |
acaccatgatgacctatcaatttacttttgggatcaaatgcggtgat |
366 |
Q |
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| T |
28652 |
a---catcatgaccaattattttacttttgggatcaaatgcagtgat |
28609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 7166768 - 7166859
Alignment:
| Q |
36 |
acaaataaagagaccaatgacaacagaaaatacaatgaaaaataagagagtaatgaccaaaaagaaacatgtttgtttttgaacaatctataaa |
129 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||| |||||| || |||| |||||||||||||||| |||||| |||||||||| |
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| T |
7166768 |
acaaataaagagaccaatgacagctgaaaatacaatgaaaaaagagagagcaaggacc--aaagaaacatgtttgtctttgaaaaatctataaa |
7166859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 7173038 - 7173154
Alignment:
| Q |
9 |
gagaagaaagatgtatgggggag--ggatacaaataaagagaccaatgacaacagaaaatacaatgaaaaataagagagtaatgaccaaaaagaaacatg |
106 |
Q |
| |
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|||||||||||||||||| |||| || ||||||||||||| |||||||| | |||||||||||||||||| |||||| || |||| |||| |||||| |
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| T |
7173038 |
gagaagaaagatgtatggaggagagggggacaaataaagagaacaatgacagctgaaaatacaatgaaaaattagagagaaaggacc--aaagcaacatg |
7173135 |
T |
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| Q |
107 |
tttgtttttgaacaatcta |
125 |
Q |
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|||||||| ||||||||| |
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| T |
7173136 |
tttgttttccaacaatcta |
7173154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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