View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16256_low_28 (Length: 362)
Name: NF16256_low_28
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 59 - 345
Target Start/End: Complemental strand, 9489503 - 9489219
Alignment:
| Q |
59 |
aaaaatacattcaatactattttgataaatttagggactatagcgacaacacctacatatttaaggataaaattggaagaaaaagagctacaacaaaact |
158 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9489503 |
aaaaatacattcaatattattttgataaatttagagactatagcgacaacacctacatatttaaggataaaattggaagaaaaagagccacaacaaaact |
9489404 |
T |
|
| Q |
159 |
tgatatctcattttgacattggtataaaatttaggaatatatatataatacttttgaggaccttgtttggatttatggttatcattggaatcaaaggata |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9489403 |
tgatatctcattttgacattggtataaaatataggaatatatata--atacttttgaggaccttgtttggatttatggttatcattggaatcaaaggata |
9489306 |
T |
|
| Q |
259 |
tcactattttggagactaaaaatgagattgaaattttgtcaactatttgattatacccagctaaatgaggaggaaatgtctcacaag |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9489305 |
tcactattttggagactaaaaatgagattgaaattttgtcaattatttgattatacccagctaaatgaggaggaaatgtcttacaag |
9489219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University