View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_29 (Length: 359)
Name: NF16256_low_29
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 34 - 353
Target Start/End: Original strand, 27059961 - 27060280
Alignment:
| Q |
34 |
atgaaaccaacaagggcatgaaatctctgctttctcaatctacacggaagtaagaaaaaatcaacacaattaataaagtctgaattacctttttaataaa |
133 |
Q |
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| T |
27059961 |
atgaaaccaacaagggcatgaaatctttgctttttcaatctacacggaagtaagaaaaaatcaacacaattaataaagtctgaattacctttttaataaa |
27060060 |
T |
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| Q |
134 |
tcatcttcataacaattcaaattctgaaaaaatgaatttcttaagataagtatccatatactcaaatcacaaatacaacattgttttcccttcattattc |
233 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27060061 |
tcattttcataacaattcaaattctgaaaaactgaatttcttaagataagtatccatatactcaaatcacaaatacaacattgttttcccttcattattc |
27060160 |
T |
|
| Q |
234 |
ttaccttaatgtttcaaatccaacaacctaacatctggaaaatgtcagaatttgccaaggcatggc-aagcatctgaaagttgtgtgatcactagatttt |
332 |
Q |
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| T |
27060161 |
ttaccttaatgttgcacatccaactacctaacatctggaaaaagtcagaatttg-caaggcatggcaaagcatctgaaagttgggtgatcactagatttt |
27060259 |
T |
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| Q |
333 |
tacaatattctttcttctctc |
353 |
Q |
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| T |
27060260 |
tacaatattctttcttctctc |
27060280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 9776590 - 9776654
Alignment:
| Q |
164 |
aatgaatttcttaagataagtatccatatactcaaatcacaaatacaacattgttttcccttcat |
228 |
Q |
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| T |
9776590 |
aatgaacttcttaagataagtatccatatactcaaatatcaaatacaacacagttttcccatcat |
9776654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 33482442 - 33482343
Alignment:
| Q |
164 |
aatgaatttcttaagataagtatccatatactcaaatcacaaatacaacattgttttcccttcattattcttaccttaatgtttcaaatccaacaaccta |
263 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| || |||| ||| ||||||| ||||||||||||| |
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| T |
33482442 |
aatgaatttcttaagatcagtatccatatactcaaaaactaaatacaacacagttttcccttctttgttctgccct---tgtttcacatccaacaaccta |
33482346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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