View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_3 (Length: 539)
Name: NF16256_low_3
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Original strand, 217939 - 218454
Alignment:
| Q |
18 |
gttcctcctcattccctataattcaacatgtgaacccaaataattactatttcgtctcttttctttttacctcaatttatttttaattcatataatttct |
117 |
Q |
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| T |
217939 |
gttcctcctcattccctataattcaacatgtgaacccaaataattactatttcgtctcttttctttttacctcaatttatttttaattcatataatttct |
218038 |
T |
|
| Q |
118 |
aagataatttggatttgctataagaaaattagagttgccaacttagagcctaatttaattctctgagaatatcaaatttttcaaaaaattaaattacctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
218039 |
aagataatttggatttgctataagaaaattagagttgccaacttagagcctaatttaattctctgagaatatcaaattttttaaaaaattaaattacctt |
218138 |
T |
|
| Q |
218 |
ttaaattggtgactccaaatgattttcttattggagatctatagtcattttactaattctctcaataacaacatgatattgtaggcatatacaatttgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
218139 |
ttaaattggtgactccaaatgattttcttattggagatctatagtcattttactaattctctcaataacaacatgatattgtaggcatatacaatttgta |
218238 |
T |
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| Q |
318 |
ttctttagcaagaagagattcaaaacttttatctaatcaaaatctaaaatataaaaacttgtcggatttcatcatagcatacgtcatttaaaattaccat |
417 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
218239 |
ttctttagcaagaagagattctaaacttttatctaatcaaaatctaaaatataaaaacttgtcggatttcatcatagcatacgtcatttaaaattaccat |
218338 |
T |
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| Q |
418 |
ttatcatgtcatgactcaaaagatcaaattgcattcctaatttggcaatgttccacatgctagaagttagtatcataaatatataaaaataaatacaatg |
517 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
218339 |
ttatcatgtcatgactcaaaagatcaaattgtattcctaatttggcaatgttccacatgctagaagttagtatcataaatatataaaaataaatacaatg |
218438 |
T |
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| Q |
518 |
attatcttcatctcac |
533 |
Q |
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| T |
218439 |
attatcttcatttcac |
218454 |
T |
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