View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_31 (Length: 350)
Name: NF16256_low_31
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 42393657 - 42393313
Alignment:
| Q |
1 |
ccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393657 |
ccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaag |
42393558 |
T |
|
| Q |
101 |
cagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393557 |
cagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgtctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaa |
42393458 |
T |
|
| Q |
201 |
ggggtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgttagaatttgatccgacaaggttcttggatggtaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42393457 |
ggggtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaa |
42393358 |
T |
|
| Q |
301 |
tgggattataaagggaatgacttcaattatttcccctttgcttct |
345 |
Q |
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| T |
42393357 |
tgggattataaagggaatgacttcaattatttcccctttggttct |
42393313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 42377105 - 42376766
Alignment:
| Q |
1 |
ccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaag |
100 |
Q |
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|||| ||| |||||||||||||||||||| || ||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || | |
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| T |
42377105 |
ccagaagtgatgaggaaggttcaagaggagttagaaactgtggttggaaaagataacttagtagaagagtctcatattcacaagctaacctacttacatg |
42377006 |
T |
|
| Q |
101 |
cagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaa |
200 |
Q |
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|||| ||||||||||| |||||||| ||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| | |
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| T |
42377005 |
cagtgatgaaagaaactcttcgtttacaccctgcacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccaga |
42376906 |
T |
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| Q |
201 |
ggggtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgttagaatttgatccgacaaggttcttggatggtaaa |
300 |
Q |
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||| ||| |||| ||| | |||||||||||||||||||||||||||| |||||||||| || ||||||||||||| ||||||||||||||||||||| |
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| T |
42376905 |
gggatctcgtgtctttatcaacgtttgggctattcatagagacccttatgtttgggagaacccactagaatttgatcctacaaggttcttggatggtaaa |
42376806 |
T |
|
| Q |
301 |
tgggattataaagggaatgacttcaattatttcccctttg |
340 |
Q |
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| T |
42376805 |
tgggattatagtgggaatgacttcaactatttcccttttg |
42376766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42387454 - 42387228
Alignment:
| Q |
1 |
ccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42387454 |
ccagaagtaatgaggaaggttcaagaggaactggaaatcgtggttgggaaagataacttagtagaagagtctcatattcaaaagctaccctacttgcaag |
42387355 |
T |
|
| Q |
101 |
cagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| | |
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| T |
42387354 |
cagtaatgaaagaaacccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccaga |
42387255 |
T |
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| Q |
201 |
ggggtcttgtgtgtttgtgaacgtttg |
227 |
Q |
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||| ||| |||| ||| | |||||||| |
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| T |
42387254 |
gggatctcgtgtctttatcaacgtttg |
42387228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 42387220 - 42387162
Alignment:
| Q |
282 |
aaggttcttggatggtaaatgggattataaagggaatgacttcaattatttcccctttg |
340 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |
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| T |
42387220 |
aaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttcccttttg |
42387162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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