View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_32 (Length: 325)
Name: NF16256_low_32
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 312
Target Start/End: Original strand, 49698385 - 49698673
Alignment:
| Q |
24 |
aaaccatcattacaaatcactcaacgattaattttgtggagcttcattgattaatgtcaaggagaagaagcaattaacaccatacaataccacacaaatt |
123 |
Q |
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| T |
49698385 |
aaaccatcattacaaatcactcaacgattaattttgtggaacttcattgattaatgtcaaggagaagaagcaattaacaccatacaataccacacaaatt |
49698484 |
T |
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| Q |
124 |
ccatctccagagaattaataaagaagctagtgttgcatggtgattaatcatataatgattgaacaaagttagctagcttcataaaaaccgtagacgtaca |
223 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698485 |
ccatctccagagaattaataaagaagctggtgttgcatggtgattaatcatataatgattgaacaaagttagctagcttcataaaaaccgtagacgtaca |
49698584 |
T |
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| Q |
224 |
atcgtgacattaagaaatttcattgaaacattgttactaatctctacggtgtgcaaaaatgatgtatgaaagccacaacgatgatgatg |
312 |
Q |
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| T |
49698585 |
atcgtgacattaagaaatttcattgaaacattgttactaatctctacggtgtgcaaaaatgatgtatgaaagccacaacgatgatgatg |
49698673 |
T |
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