View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16256_low_36 (Length: 307)

Name: NF16256_low_36
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16256_low_36
NF16256_low_36
[»] chr2 (3 HSPs)
chr2 (9-297)||(12607420-12607699)
chr2 (49-95)||(5322166-5322212)
chr2 (49-95)||(16519136-16519182)
[»] chr8 (6 HSPs)
chr8 (45-94)||(28517295-28517344)
chr8 (49-95)||(40985121-40985167)
chr8 (49-95)||(26772689-26772735)
chr8 (49-95)||(43733167-43733213)
chr8 (50-95)||(34272504-34272549)
chr8 (49-89)||(9054566-9054606)
[»] chr7 (2 HSPs)
chr7 (49-95)||(30080960-30081006)
chr7 (50-95)||(33406679-33406724)
[»] chr4 (5 HSPs)
chr4 (45-95)||(42777336-42777385)
chr4 (49-96)||(54205827-54205874)
chr4 (49-95)||(27485289-27485335)
chr4 (50-95)||(31530008-31530053)
chr4 (50-95)||(38317276-38317321)
[»] chr1 (2 HSPs)
chr1 (49-95)||(27102871-27102917)
chr1 (49-95)||(50476526-50476572)
[»] chr5 (4 HSPs)
chr5 (43-95)||(13294021-13294072)
chr5 (49-92)||(1978194-1978237)
chr5 (49-95)||(6491172-6491218)
chr5 (53-95)||(27480219-27480261)
[»] scaffold0991 (1 HSPs)
scaffold0991 (44-95)||(3232-3283)
[»] scaffold0036 (1 HSPs)
scaffold0036 (49-95)||(82784-82830)
[»] chr3 (1 HSPs)
chr3 (49-95)||(32858818-32858864)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 12607420 - 12607699
Alignment:
Q  9 aggacatttggagaggatgactttgaatggttcttcttttttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtatacaatagaggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||| ||||||    
T  12607420 aggacatttggagaggatgactttgaatggttcttcttttttcataatacaaaatcctcatcatttgaggtaactcaaaaattgtata--ataaaggtgt 12607517  T
Q  109 tgtagaaagatagtttaccaaaaattgtttgacacagtgttaaatccttttgatttgggagaatatataatgttaagttc-ttttttgttagtaggttat 207  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12607518 tgtagaaagatagtttaccaaaaattgtttcacagagtgttaaatccttttgatttgggagaatatataatgttaagttctttttttgttagtaggttat 12607617  T
Q  208 attataactaccgacttgtataacatcttagtagtgactaaatctttatcaagaacctacataaaactcaagatgcgttttcccatccca 297  Q
    |||||||||||| |||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12607618 attataactaccaacttgtata-------agtagtgact-aatctttatcaagaacctacataaaactcaagatgcgttttcccatccca 12607699  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 5322212 - 5322166
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||||||||||||||||| ||||||| || |||||||||| |||||    
T  5322212 ttcataatacaaaatcctcctcatttgggggaactcaaaaactgtat 5322166  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 16519182 - 16519136
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||||||||||||||||| ||||||| ||||||| |||| ||||||    
T  16519182 ttcataatacaaaatcctcctcatttggggaaactaaaaagttgtat 16519136  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 28517344 - 28517295
Alignment:
Q  45 ttttttcataatacaaaatcctcatcatttgaggaaactcaaaaattgta 94  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  28517344 ttttttcataatacaaaatcctcatcacttggggatactcaaaaattgta 28517295  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 40985167 - 40985121
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||    
T  40985167 ttcataatacaaaatcctcctcatttgggggaactcaaaaattgtat 40985121  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 26772735 - 26772689
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    |||||||||||||| ||||||||||||| | |||| |||||||||||    
T  26772735 ttcataatacaaaaccctcatcatttgaaggaactaaaaaattgtat 26772689  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 43733213 - 43733167
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||||||||||||||||| |||||||||| || | |||||||||||    
T  43733213 ttcataatacaaaatcctcctcatttgagggaattaaaaaattgtat 43733167  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 34272504 - 34272549
Alignment:
Q  50 tcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    |||||||| ||||||| | ||||||| |||||||||||||||||||    
T  34272504 tcataataaaaaatccccctcatttggggaaactcaaaaattgtat 34272549  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 9054606 - 9054566
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaa 89  Q
    |||| |||||||||||||| ||||||||||||||| |||||    
T  9054606 ttcaaaatacaaaatcctcctcatttgaggaaactaaaaaa 9054566  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 30080960 - 30081006
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||    
T  30080960 ttcataatacaaaaccctcatcatttgaggaaacaaaaaaattgtat 30081006  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 33406724 - 33406679
Alignment:
Q  50 tcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    |||||||| ||||||| | |||||||||| ||||||||||||||||    
T  33406724 tcataataaaaaatccccctcatttgagggaactcaaaaattgtat 33406679  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 42777385 - 42777336
Alignment:
Q  45 ttttttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  42777385 ttttttcataatacaaaatcttcatcatttta-gaaactcaaaaattgtat 42777336  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 54205827 - 54205874
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtata 96  Q
    ||||||| ||||||||||| ||||||| || |||||||||||||||||    
T  54205827 ttcataaaacaaaatcctcctcatttgggggaactcaaaaattgtata 54205874  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 27485335 - 27485289
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||    
T  27485335 ttcataatacaaaatcctcctcatttgagggaactcgaaaaatgtat 27485289  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 31530008 - 31530053
Alignment:
Q  50 tcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    |||||||| ||||||||| ||||||| || ||||||||||||||||    
T  31530008 tcataataaaaaatcctcctcatttgggggaactcaaaaattgtat 31530053  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 38317321 - 38317276
Alignment:
Q  50 tcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    |||||||| ||||||||| ||||||| || ||||||||||||||||    
T  38317321 tcataataaaaaatcctcctcatttgggggaactcaaaaattgtat 38317276  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 27102917 - 27102871
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  27102917 ttcataatacaaaatgctcttcatttggggaaactcaaaaattgtat 27102871  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 50476526 - 50476572
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||||||||||||||| | |||||||||| ||||||||||||||||    
T  50476526 ttcataatacaaaatccccctcatttgagggaactcaaaaattgtat 50476572  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 13294072 - 13294021
Alignment:
Q  43 tcttttttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||||||||||||||||||||||| |||||| | |||||| |||||||||||    
T  13294072 tcttttttcataatacaaaatcctcctcattt-aagaaacttaaaaattgtat 13294021  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 1978194 - 1978237
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattg 92  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||    
T  1978194 ttcataatacaaaatccccctcatttggggaaactcaaaaattg 1978237  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 6491172 - 6491218
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    |||||||||||||||| || ||||||| || ||||||||||||||||    
T  6491172 ttcataatacaaaatcttcctcatttgggggaactcaaaaattgtat 6491218  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 27480261 - 27480219
Alignment:
Q  53 taatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||    
T  27480261 taataaaaaatcctcctcatttgagggaactcaaaaattgtat 27480219  T

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Target: scaffold0991 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 3232 - 3283
Alignment:
Q  44 cttttttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    |||||||||||||||||||||||| ||||||| ||||  | |||||||||||    
T  3232 cttttttcataatacaaaatcctcctcatttggggaacttaaaaaattgtat 3283  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 82784 - 82830
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||||||||||||||||| | |||||||| ||||| ||||||||||    
T  82784 ttcataatacaaaatcctcctaatttgagggaactccaaaattgtat 82830  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 32858818 - 32858864
Alignment:
Q  49 ttcataatacaaaatcctcatcatttgaggaaactcaaaaattgtat 95  Q
    ||||||||| ||||||||| ||||||| || ||||||||||||||||    
T  32858818 ttcataatataaaatcctcctcatttgggggaactcaaaaattgtat 32858864  T

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