View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_39 (Length: 277)
Name: NF16256_low_39
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 47074788 - 47074541
Alignment:
| Q |
14 |
aaaggcgcaaattttgtcatgcgatcaacacgcaatggacaagagaaggtattcattggtccctgaaatcgaatttgtgttatattttggatttgatctc |
113 |
Q |
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| T |
47074788 |
aaaggcgcaaattttgtcatgcgatccacacgcaatggacaagagaaggtattcattggtccctgaaatcgaatttgtgttatattttggatttgatctc |
47074689 |
T |
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| Q |
114 |
tgcttaacctcacacttaataaaatttcttcattataggttctgaagggtcaactctttgtggatcaatattgtgaaaaggaacaattcagctttattga |
213 |
Q |
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| T |
47074688 |
tgcttaacctcacacttaataaaatttcttcattataggttctgaagggtcaactctttgtggatcaatattgtgaaaaggaacaattcagctttattga |
47074589 |
T |
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| Q |
214 |
ctacgtatctagtggatttgaactaaacttcatggttgcggtagattt |
261 |
Q |
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| T |
47074588 |
ctacgtatctagtggatttgaactaaacttcatggttgcggtagattt |
47074541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 47056689 - 47056577
Alignment:
| Q |
137 |
atttcttcattataggttctgaagggtcaactctttgtggatcaatattgtgaaaaggaacaattcagctttattgactacgtatctagtggatttgaac |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
47056689 |
atttcttcattataggttctgaagggtcaactctttgtggaccaatattgagaaaaggaacaattcagctttattgattacatatctagtggatttgaac |
47056590 |
T |
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| Q |
237 |
taaacttcatggt |
249 |
Q |
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| T |
47056589 |
tgaacttcatggt |
47056577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 18230618 - 18230861
Alignment:
| Q |
14 |
aaaggcgcaaattttgtcatgcgatcaacacgcaatggacaagagaaggtattcattggtccctgaaatcgaatttgtgttatattttggatttgatctc |
113 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||| |||| || | ||||||||||| | | ||||| |
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| T |
18230618 |
aaaggcgcaaattttgtcatgccatccacacgcaatggacaagagaaggtgttcattgatccctgcaatcaaagtcaaattatattttgggtctaatctc |
18230717 |
T |
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| Q |
114 |
tgcttaacctcacacttaataaaatttcttcattataggttctgaagggtcaactctttgtggatcaatattgtgaaaaggaacaattcagctttattga |
213 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18230718 |
tgcttaacgtcaca----ataaaatttcttcattataggttctgaagggtcaactctttgtggatcaatattgtgaaaaggaacaattcagctttattga |
18230813 |
T |
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| Q |
214 |
ctacgtatctagtggatttgaactaaacttcatggttgcggtagattt |
261 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18230814 |
ctacatatctagtggatttgaactaaacttcttggttgcggtagattt |
18230861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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