View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_4 (Length: 536)
Name: NF16256_low_4
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 191 - 438
Target Start/End: Complemental strand, 46999560 - 46999313
Alignment:
| Q |
191 |
ttacaagtggtgttcttggaaaattttgttgaagcacttccaagaggaaaagtctaacagagtaagaatattctttattgaaaacgtttggttatttctt |
290 |
Q |
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| T |
46999560 |
ttacaagtggtgttcttggaaaattttgttgaagcacttccaagaggaaaagtctaacagagtaagaatattctttattgaaaacgtttggttatttctt |
46999461 |
T |
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| Q |
291 |
tattgaccatagttcaattttgacggttaactctttttatcatcttcaacagaattagtcaaagaaaaatgtaataagagaagagagctctctttttacc |
390 |
Q |
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| T |
46999460 |
tattgaccatagttcaattttgacggttaactctttttatcatcttcaacagaattagtcaaagaaaaatgtaataagagaagagagctctctttttacc |
46999361 |
T |
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| Q |
391 |
atctaaaagaagagcaacttttctgtaaaacatgaagagagttctctc |
438 |
Q |
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| T |
46999360 |
atctaaaagaagagcaacttttctgtaaaacatgaagggagctctctc |
46999313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 46999703 - 46999575
Alignment:
| Q |
14 |
attattcttcatatttcagtaacgtttttaaattatgatatgatgatgataatatgatttcagcagtaggtaggttctaatgtattattttcttcctcct |
113 |
Q |
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| T |
46999703 |
attattcttcatagttcagtaacgtttttaaattatgatatgatgatgataatatgatttcagcagtaggtaggttctaatgtattattttcttcctcct |
46999604 |
T |
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| Q |
114 |
gaatctatatttagaaattaagcaataat |
142 |
Q |
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| T |
46999603 |
gaatctatatttagaaattaagcaataat |
46999575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 414 - 519
Target Start/End: Complemental strand, 46999218 - 46999113
Alignment:
| Q |
414 |
tgtaaaacatgaagagagttctctcggcggtaataagagaagagagctctctcttaacgataatctcgagtctaagaccctgcatgtaaaataaaacata |
513 |
Q |
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||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46999218 |
tgtaaaatatgaagagagctctctcgacggtaacaagagaagagagctctctcttaacgataatctcgagtctaaaaccctgcatgtaaaataaaacata |
46999119 |
T |
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| Q |
514 |
gttctt |
519 |
Q |
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|||||| |
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| T |
46999118 |
gttctt |
46999113 |
T |
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