View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_42 (Length: 267)
Name: NF16256_low_42
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 3085095 - 3085336
Alignment:
| Q |
12 |
atagggaggatagaaagcctagaccaagaagctttaaggggtggattcattctggagaaagtaataggtccaatttcaacaggtcatttggagctccgaa |
111 |
Q |
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| T |
3085095 |
atagggaggatagaaagcctagaccaagaagctttaaggggtggattcattctggagaaagtaataggtccaatttcaacaggtcatttggagctccgaa |
3085194 |
T |
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| Q |
112 |
acactgatccaaatgataaccctttggtaacatttaactacttccaggacccaagagacttggaacgatgcatacaaggcatgggcacaattgagaaaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3085195 |
acactgatccaaatgataaccctttggtaacatttaactacttccaggacccaagagacttggaacgatgcatacaaggcatgggcacaattgagaaaat |
3085294 |
T |
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| Q |
212 |
aatagattcaaatgcttttgctccatttagatacaataacat |
253 |
Q |
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| T |
3085295 |
aatagattcaaatgcttttgctccatttagatacaataacat |
3085336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 3093941 - 3094175
Alignment:
| Q |
12 |
atagggaggatagaaagcctagaccaagaagctttaaggggtggattcattctggagaaagtaataggtccaatttcaacaggtcatttggagctccgaa |
111 |
Q |
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|||| |||||| || ||||| ||||||||||| || ||||||||||||||||| || ||| | | || ||||||||||| ||||||||||||||||||| |
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| T |
3093941 |
atagagaggatggagagcctggaccaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaa |
3094040 |
T |
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| Q |
112 |
acactgatccaaatgataaccctttggtaacatttaactacttccaggacccaagagacttggaacgatgcatacaaggcatgggcacaattgagaaaat |
211 |
Q |
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| T |
3094041 |
acaccgatccaaatgagaaccctttggtaacatttaactacttccaagacccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaat |
3094140 |
T |
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| Q |
212 |
aatagattcaaatgcttttgctccatttagataca |
246 |
Q |
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|||||||||||| || ||| ||||||||| ||||| |
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| T |
3094141 |
aatagattcaaaggcattttctccatttaaataca |
3094175 |
T |
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