View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16256_low_47 (Length: 252)

Name: NF16256_low_47
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16256_low_47
NF16256_low_47
[»] chr5 (30 HSPs)
chr5 (1-156)||(40483005-40483159)
chr5 (3-155)||(35695200-35695354)
chr5 (17-124)||(29686213-29686322)
chr5 (179-234)||(40482962-40483014)
chr5 (17-124)||(16995442-16995552)
chr5 (7-154)||(11832366-11832516)
chr5 (37-124)||(3945184-3945271)
chr5 (25-112)||(5856404-5856491)
chr5 (26-102)||(18282264-18282342)
chr5 (35-112)||(3213642-3213719)
chr5 (35-112)||(9699584-9699661)
chr5 (35-87)||(14205328-14205380)
chr5 (59-135)||(28727934-28728010)
chr5 (25-112)||(41863313-41863401)
chr5 (90-152)||(17551905-17551967)
chr5 (25-124)||(29663373-29663474)
chr5 (35-112)||(2000841-2000918)
chr5 (35-112)||(2529907-2529984)
chr5 (38-103)||(24090657-24090722)
chr5 (35-112)||(37461451-37461528)
chr5 (35-68)||(37516897-37516930)
chr5 (35-112)||(40307685-40307762)
chr5 (3-76)||(833881-833956)
chr5 (35-155)||(10242413-10242530)
chr5 (3-104)||(27598333-27598436)
chr5 (35-124)||(28040210-28040300)
chr5 (35-99)||(28400341-28400405)
chr5 (35-87)||(36515689-36515741)
chr5 (35-87)||(42416529-42416581)
chr5 (7-76)||(42522696-42522767)
[»] chr7 (23 HSPs)
chr7 (35-124)||(1292090-1292179)
chr7 (25-103)||(1827541-1827619)
chr7 (29-113)||(29286179-29286261)
chr7 (35-112)||(38436254-38436331)
chr7 (42-103)||(42252563-42252624)
chr7 (35-124)||(43358721-43358810)
chr7 (56-124)||(17264189-17264257)
chr7 (35-123)||(32358827-32358915)
chr7 (25-113)||(3434004-3434093)
chr7 (79-154)||(39990620-39990695)
chr7 (35-112)||(19036746-19036823)
chr7 (35-112)||(20717813-20717890)
chr7 (35-112)||(20762494-20762571)
chr7 (35-112)||(29488060-29488137)
chr7 (35-112)||(32806555-32806632)
chr7 (35-112)||(33233041-33233118)
chr7 (35-112)||(34285183-34285260)
chr7 (35-124)||(35338325-35338414)
chr7 (21-111)||(40358459-40358551)
chr7 (35-87)||(4406826-4406878)
chr7 (35-87)||(4614722-4614774)
chr7 (35-87)||(20135560-20135612)
chr7 (17-66)||(39959408-39959459)
[»] chr8 (19 HSPs)
chr8 (41-124)||(6629120-6629203)
chr8 (3-127)||(11420394-11420520)
chr8 (59-124)||(16337975-16338040)
chr8 (14-113)||(15920045-15920145)
chr8 (35-112)||(27748183-27748260)
chr8 (35-112)||(39443247-39443324)
chr8 (35-110)||(34151098-34151173)
chr8 (3-112)||(11876402-11876514)
chr8 (3-112)||(11891409-11891521)
chr8 (35-112)||(2185027-2185104)
chr8 (35-155)||(8082802-8082923)
chr8 (35-112)||(20666007-20666084)
chr8 (35-112)||(30551369-30551446)
chr8 (71-112)||(32675855-32675896)
chr8 (38-87)||(39201106-39201155)
chr8 (35-112)||(44216119-44216196)
chr8 (25-94)||(4438535-4438606)
chr8 (3-112)||(17949974-17950085)
chr8 (35-87)||(41904356-41904408)
[»] chr2 (23 HSPs)
chr2 (25-113)||(8904952-8905042)
chr2 (35-112)||(23914759-23914836)
chr2 (25-112)||(11694210-11694299)
chr2 (3-112)||(21384631-21384740)
chr2 (36-155)||(3752487-3752606)
chr2 (25-112)||(23914560-23914649)
chr2 (35-112)||(744915-744992)
chr2 (35-155)||(41860288-41860407)
chr2 (25-112)||(11681636-11681725)
chr2 (32-112)||(7360033-7360113)
chr2 (32-112)||(19491601-19491681)
chr2 (35-102)||(35468718-35468785)
chr2 (36-109)||(27312897-27312973)
chr2 (3-155)||(38502187-38502342)
chr2 (35-112)||(3708033-3708110)
chr2 (41-102)||(7301588-7301649)
chr2 (35-112)||(11869306-11869383)
chr2 (3-113)||(12599503-12599615)
chr2 (35-112)||(35360699-35360776)
chr2 (35-123)||(9740303-9740391)
chr2 (20-121)||(16573814-16573917)
chr2 (25-106)||(28416943-28417026)
chr2 (71-135)||(32226478-32226542)
[»] chr4 (32 HSPs)
chr4 (35-155)||(4505741-4505861)
chr4 (42-124)||(6484700-6484782)
chr4 (35-145)||(47393501-47393610)
chr4 (17-68)||(47683473-47683526)
chr4 (17-124)||(55109845-55109954)
chr4 (35-112)||(10214333-10214410)
chr4 (37-124)||(38940628-38940715)
chr4 (35-108)||(6028630-6028703)
chr4 (35-112)||(26872013-26872090)
chr4 (35-112)||(46058383-46058460)
chr4 (19-112)||(28477048-28477143)
chr4 (36-124)||(28715416-28715504)
chr4 (48-155)||(4605803-4605910)
chr4 (26-121)||(24670062-24670157)
chr4 (3-103)||(26067242-26067343)
chr4 (38-120)||(28704043-28704126)
chr4 (3-51)||(33997700-33997750)
chr4 (26-112)||(24080484-24080570)
chr4 (22-112)||(2599504-2599595)
chr4 (35-112)||(9097909-9097986)
chr4 (35-112)||(10262413-10262490)
chr4 (35-112)||(21561965-21562042)
chr4 (35-154)||(24610562-24610678)
chr4 (36-97)||(25881839-25881900)
chr4 (23-112)||(34664663-34664752)
chr4 (35-112)||(41144712-41144789)
chr4 (35-112)||(43329486-43329563)
chr4 (35-124)||(47044846-47044935)
chr4 (35-112)||(51187488-51187565)
chr4 (35-112)||(51449552-51449629)
chr4 (35-87)||(10582090-10582142)
chr4 (17-122)||(48458014-48458121)
[»] chr1 (21 HSPs)
chr1 (21-109)||(6294660-6294750)
chr1 (45-155)||(41103226-41103336)
chr1 (35-112)||(44821042-44821119)
chr1 (25-124)||(6732192-6732293)
chr1 (35-112)||(21966221-21966298)
chr1 (35-112)||(33218381-33218457)
chr1 (19-124)||(31239034-31239141)
chr1 (19-102)||(40780797-40780881)
chr1 (56-102)||(10428072-10428118)
chr1 (35-112)||(7308624-7308701)
chr1 (35-112)||(10427468-10427544)
chr1 (90-155)||(11035781-11035845)
chr1 (35-112)||(16033607-16033684)
chr1 (35-112)||(18090835-18090912)
chr1 (36-112)||(5541648-5541724)
chr1 (35-103)||(10428265-10428333)
chr1 (35-87)||(11606821-11606873)
chr1 (59-128)||(19269483-19269554)
chr1 (35-87)||(28569195-28569247)
chr1 (35-87)||(39729402-39729454)
chr1 (35-87)||(46040761-46040813)
[»] chr3 (20 HSPs)
chr3 (35-124)||(47410886-47410976)
chr3 (19-124)||(50585711-50585818)
chr3 (35-112)||(10617012-10617089)
chr3 (38-123)||(47410517-47410602)
chr3 (53-106)||(51103228-51103281)
chr3 (35-123)||(7534019-7534107)
chr3 (79-155)||(21190403-21190479)
chr3 (3-112)||(37681331-37681442)
chr3 (35-87)||(54796479-54796531)
chr3 (25-112)||(2594462-2594551)
chr3 (35-112)||(915857-915934)
chr3 (35-112)||(12170896-12170973)
chr3 (59-112)||(18390485-18390538)
chr3 (35-84)||(22518702-22518751)
chr3 (35-112)||(22762702-22762779)
chr3 (35-112)||(42188393-42188470)
chr3 (35-112)||(44075800-44075877)
chr3 (56-112)||(30268257-30268313)
chr3 (35-87)||(37413173-37413225)
chr3 (35-87)||(43317051-43317103)
[»] chr6 (13 HSPs)
chr6 (35-122)||(33803895-33803983)
chr6 (32-112)||(11518903-11518983)
chr6 (35-125)||(10129708-10129799)
chr6 (35-113)||(12582872-12582950)
chr6 (36-122)||(14224571-14224657)
chr6 (33-103)||(16260364-16260434)
chr6 (35-112)||(246999-247076)
chr6 (35-112)||(1930793-1930870)
chr6 (35-112)||(3090935-3091012)
chr6 (3-113)||(4119095-4119207)
chr6 (35-112)||(18313581-18313658)
chr6 (3-112)||(3533205-3533315)
chr6 (35-87)||(28231612-28231664)
[»] scaffold1793 (1 HSPs)
scaffold1793 (22-112)||(562-652)
[»] scaffold0047 (1 HSPs)
scaffold0047 (25-112)||(65506-65595)
[»] scaffold0669 (1 HSPs)
scaffold0669 (35-112)||(7333-7410)
[»] scaffold0013 (1 HSPs)
scaffold0013 (3-112)||(96998-97107)
[»] scaffold0078 (1 HSPs)
scaffold0078 (35-112)||(5818-5895)
[»] scaffold0045 (1 HSPs)
scaffold0045 (35-87)||(14565-14617)
[»] scaffold0038 (1 HSPs)
scaffold0038 (35-87)||(32109-32161)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 40483159 - 40483005
Alignment:
Q  1 cctatctttttctattacatcaataatataacaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40483159 cctatcttattctattacatcaataatataacaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 40483060  T
Q  101 aagagtataattacaagtgaaaaatccatctcaaaaccttgtattctctttatatc 156  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  40483059 aagagtataatttcaagtg-aaaatccatctcaaaaccttgtattctctttatatc 40483005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 35695354 - 35695200
Alignment:
Q  3 tatctttttctattacatcaataatata--acaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 100  Q
    |||||||||| || ||| ||| ||||||  ||| ||||||||||||  ||| || ||||||| ||||| |||||||| ||||||||| ||||||||||||    
T  35695354 tatctttttcaatgacaccaacaatataccacatataatataaatttatatctttttgaatggcaccagcaatatagcattcttatatgcaaatttgttt 35695255  T
Q  101 aagagtataattacaagtgaaaaatccatctcaaaaccttgtattctctttatat 155  Q
    ||| ||||||||  |||||||||| ||| | ||||||| | ||||  ||||||||    
T  35695254 aagggtataattggaagtgaaaaagccagcccaaaaccatatatttcctttatat 35695200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 29686213 - 29686322
Alignment:
Q  17 acatcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattac 114  Q
    ||||||| |||||||||||||  |||||||||||||| || |||||||||||||  ||  ||  ||||||||||  |||||||||||||||||||||||     
T  29686213 acatcaacaatataacaaatataatataaattcttatctttttgaatgacaccaataaattaacattcttatagtaaaatttgtttaagagtataattag 29686312  T
Q  115 aagtgaaaaa 124  Q
     |||||||||    
T  29686313 gagtgaaaaa 29686322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 40483014 - 40482962
Alignment:
Q  179 tctttatatctaatactagtagtataaatgattttcactctctagaaccagcgaag 234  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  40483014 tctttatatctaatactagta---taaatgattttcactctctagaaccagcgaag 40482962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 16995552 - 16995442
Alignment:
Q  17 acatcaataatataacaaata-atataaattcttat-attgttgaatgacaccatcaatatagtattcttataggcaaatttgtt-taagagtataatta 113  Q
    ||||||||||||||||||||| ||||||||| ||||  || ||||||||||| | |||||||  ||||||| ||| |||||||||  ||||||||||||     
T  16995552 acatcaataatataacaaatatatataaattgttatcttttttgaatgacactaacaatataacattcttacaggaaaatttgttaaaagagtataattg 16995453  T
Q  114 caagtgaaaaa 124  Q
     ||||||||||    
T  16995452 aaagtgaaaaa 16995442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 11832516 - 11832366
Alignment:
Q  7 tttttctattacatcaataatataacaa---ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaag 103  Q
    |||||| |||||| ||| ||||||| ||   ||||||||||||||||| || || |||||||||| |||||| ||||| ||||| || | ||| ||||||    
T  11832516 tttttcaattacaccaacaatataaaaatatataatataaattcttatcttttttaatgacaccaacaatatcgtattgttataagccagtttatttaag 11832417  T
Q  104 agtataattacaagtgaaaaatccatctcaaaaccttgtattctctttata 154  Q
     | || |||  ||||||| || ||| | ||||| | |||||||||||||||    
T  11832416 ggcattattggaagtgaataaaccaccccaaaatcatgtattctctttata 11832366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 3945184 - 3945271
Alignment:
Q  37 aatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    ||||||| |||||||||| || |||||||||  ||| |||  ||| |||||| |||||||||||||||||||| ||  ||||||||||    
T  3945184 aatataagttcttatattttttaatgacacctacaaaataacattgttatagtcaaatttgtttaagagtatagttgaaagtgaaaaa 3945271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 5856404 - 5856491
Alignment:
Q  25 aatataacaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||  |||||||||||| || || |||||||||| ||| |||| |||||||| | |||||||| | ||| ||||||||    
T  5856404 aatataacaaatatcataaattcttatctttttaaatgacaccaacaaaatagcattcttatggtcaaatttgctcaagggtataatt 5856491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 18282264 - 18282342
Alignment:
Q  26 atataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaa 102  Q
    ||||||||||||  ||| ||||| |||| || ||||||||||||| ||| ||| ||||||||||| |||||||||||||    
T  18282264 atataacaaatagaatacaaatttttatctttttgaatgacaccaacaaaataatattcttatagtcaaatttgtttaa 18282342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 3213719 - 3213642
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  3213719 ataatataaattcttatatttttgaaagacacaaaaaatatggtattcttatatcaaaatttgttatagagtataatt 3213642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 9699584 - 9699661
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  9699584 ataatataaattcttatatttttgaaagacacaaaaaatatggtattcttataacaaaatttgttatagagtataatt 9699661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 14205328 - 14205380
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || || ||||||||||  |||||||||||||||||    
T  14205328 ataatataaattcttatctttttaaatgacaccaaaaatatagtattcttata 14205380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 28727934 - 28728010
Alignment:
Q  59 aatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaaa 135  Q
    |||||||||| |||||||  |||||| | |||||||||||||||| ||||||||  |||| ||||| ||| ||||||    
T  28727934 aatgacaccaacaatataacattctttttggcaaatttgtttaagggtataattgaaagttaaaaagccacctcaaa 28728010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 41863313 - 41863401
Alignment:
Q  25 aatataacaaat-aatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||| | ||||||||||||||| || || |||||||||| ||| |||| |||||||  | |||||||| ||||| ||||||||    
T  41863313 aatataacaattcaatataaattcttatcttttttaatgacaccaacaaaatagcattcttacggtcaaatttgcttaagggtataatt 41863401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 17551967 - 17551905
Alignment:
Q  90 caaatttgtttaagagtataattacaagtgaaaaatccatctcaaaaccttgtattctcttta 152  Q
    |||||||||||||| ||||||||  ||||||||||  || || |||||| |||||||||||||    
T  17551967 caaatttgtttaagggtataattgaaagtgaaaaaggcagctgaaaaccatgtattctcttta 17551905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 29663474 - 29663373
Alignment:
Q  25 aatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaa 122  Q
    |||||||||||||  ||||||||| | || || || ||||||| ||  ||||||| |||||||||  |||||||||||| || |||||||  ||||||||    
T  29663474 aatataacaaatataatataaattataatcttttttaatgacagcaataatatagcattcttatacacaaatttgtttaggattataattggaagtgaaa 29663375  T
Q  123 aa 124  Q
    ||    
T  29663374 aa 29663373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 2000918 - 2000841
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||| ||||||||| || |||||||||| ||  ||||| |||||||||||   |||||||||  |||||||||||    
T  2000918 ataatatgaattcttatctttttgaatgacatcaaaaatatggtattcttataacaaaatttgttatagagtataatt 2000841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 2529907 - 2529984
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| || |||||||| |  ||||| |||||||||||   |||||||||  | |||||||||    
T  2529907 ataatataaattcttatatttttaaatgacactaaaaatatggtattcttataacaaaatttgttatacagtataatt 2529984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 24090657 - 24090722
Alignment:
Q  38 atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaag 103  Q
    ||||||||| |||| || |||||||||||||  ||||||  ||||||||||| |||||| ||||||    
T  24090657 atataaattattatctttttgaatgacaccaataatatatcattcttataggtaaatttatttaag 24090722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 37461451 - 37461528
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  37461451 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 37461528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 37516897 - 37516930
Alignment:
Q  35 ataatataaattcttatattgttgaatgacacca 68  Q
    |||||||||||||||||||| |||||||||||||    
T  37516897 ataatataaattcttatatttttgaatgacacca 37516930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 40307685 - 40307762
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || |||| |||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  40307685 ataatataaattcttatctttttgactgacactaaaaatatggtattcttataacaaaatttgttatagagtataatt 40307762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 833956 - 833881
Alignment:
Q  3 tatctttttctattacatcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatata 76  Q
    |||||||||  || ||| ||| |||||||||||||  || ||||||||||| || ||||||||||||| |||||||    
T  833956 tatctttttgaatgacaacaacaatataacaaatataatctaaattcttatctttttgaatgacaccaacaatata 833881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 155
Target Start/End: Complemental strand, 10242530 - 10242413
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaa 134  Q
    |||||||||||||| || || |||||| ||||||  || ||| | || |||||| |||| ||||||||| ||||||||| ||||||||| || || ||||    
T  10242530 ataatataaattctcatctttttgaataacaccaataaaataat-tttttatagtcaaa-ttgtttaagggtataattaaaagtgaaaagtcaat-tcaa 10242434  T
Q  135 aaccttgtattctctttatat 155  Q
    || | || |||||||||||||    
T  10242433 aatcatgcattctctttatat 10242413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 27598436 - 27598333
Alignment:
Q  3 tatctttttctattacatcaataatataacaaat--aatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 100  Q
    |||||||||| || ||| | ||||||||||||||  |||| ||||||||||||| || ||| | |||| |||||||  | | ||||| | ||||||||||    
T  27598436 tatctttttcaatgacaactataatataacaaataaaataaaaattcttatattttttaataataccaacaatataacactattataagaaaatttgttt 27598337  T
Q  101 aaga 104  Q
    ||||    
T  27598336 aaga 27598333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 28040300 - 28040210
Alignment:
Q  35 ataatataaattcttat--attgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    |||||||||||| ||||  ||| ||||||||| ||| |||||||  ||||||||  | ||||||||||||| ||||||||  ||||||||||    
T  28040300 ataatataaatttttatttatttttgaatgacgccaacaatataacattcttatgagaaaatttgtttaag-gtataattgaaagtgaaaaa 28040210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 28400405 - 28400341
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtt 99  Q
    ||||||||||||||||| || |||||| |||| |  ||||||| |||||||||  ||||||||||    
T  28400405 ataatataaattcttatctttttgaatcacacaaaaaatatagaattcttataaccaaatttgtt 28400341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 36515689 - 36515741
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||| ||||||||| || |||||||||||||  ||||| |||||||||||    
T  36515689 ataatatgaattcttatctttttgaatgacaccaaaaatatggtattcttata 36515741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 42416529 - 42416581
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || || ||||||||||  ||||| |||||||||||    
T  42416529 ataatataaattcttatctttttaaatgacaccaaaaatatggtattcttata 42416581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 42522696 - 42522767
Alignment:
Q  7 tttttctattacatcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatata 76  Q
    |||||| || ||| |||||||||||||||||  ||| ||||||||||||| || ||| |||||| |||||||    
T  42522696 tttttcaataacaacaataatataacaaatataataaaaattcttatattttttaataacaccaacaatata 42522767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 1292090 - 1292179
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    ||||||||||||||||| || || |||||||||| |||||||| ||||||||| | ||||||||| ||||||||||||  ||||||||||    
T  1292090 ataatataaattcttatcttttttaatgacaccaacaatatagcattcttataagtaaatttgttaaagagtataattggaagtgaaaaa 1292179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 1827541 - 1827619
Alignment:
Q  25 aatataacaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaag 103  Q
    |||||||| |||||||| ||||||||| || ||||||||||||| ||| |||  ||||||| || ||||||| ||||||    
T  1827541 aatataacgaataatattaattcttattttcttgaatgacaccaacaaaataaaattcttaaagtcaaatttatttaag 1827619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 29286261 - 29286179
Alignment:
Q  29 taacaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatta 113  Q
    ||||||||||||||||||||||| || |||||| |||||| ||| |||  ||| || |||  || ||||||||||||||||||||    
T  29286261 taacaaataatataaattcttatctttttgaatcacaccaacaaaata--atttttttagtgaactttgtttaagagtataatta 29286179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 38436331 - 38436254
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  38436331 ataatataaattcttatatttttgaaagacacaaaaaatatggtattcttataacaaaatttgttatagagtataatt 38436254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 42252563 - 42252624
Alignment:
Q  42 aaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaag 103  Q
    ||||||||||||| || |||||| ||| ||| |||||||||||||||  |||||||||||||    
T  42252563 aaattcttatattttttaatgacgccaacaaaatagtattcttatagttaaatttgtttaag 42252624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 43358810 - 43358721
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    ||||||||||||||||| || || ||| |||||| ||| |||  ||| |||||| ||||||| ||||| |||||||||| |||| |||||    
T  43358810 ataatataaattcttatctttttaaattacaccaacaaaataacatttttatagtcaaatttatttaaaagtataattagaagtaaaaaa 43358721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 17264257 - 17264189
Alignment:
Q  56 ttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    |||||| ||||||  ||||||| |||||||| ||||||||||||||||  |||||||  ||||||||||    
T  17264257 ttgaattacaccaataatataggattcttattggcaaatttgtttaaggctataattgaaagtgaaaaa 17264189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 32358915 - 32358827
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaa 123  Q
    ||||||||||||||||| || || ||||||| ||  ||||||  ||| ||||| ||||||||||||| | ||||||||  |||||||||    
T  32358915 ataatataaattcttatctttttcaatgacaacaaaaatataacatttttatatgcaaatttgtttaggtgtataattggaagtgaaaa 32358827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 3434093 - 3434004
Alignment:
Q  25 aatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatta 113  Q
    |||||||||||||  ||||||||||||||  | ||||||||| | | ||| |||  |||||||||| |||||||| |||||||||||||||    
T  3434093 aatataacaaatataatataaattcttatcat-ttgaatgaccctaacaaaataacattcttatagtcaaatttgcttaagagtataatta 3434004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 39990620 - 39990695
Alignment:
Q  79 attcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaaaaccttgtattctctttata 154  Q
    |||||||||||||||||| |||||| |||||| |  |||||||||| |||  |||||||| ||||||  |||||||    
T  39990620 attcttataggcaaatttatttaagggtataactgaaagtgaaaaagccacttcaaaaccatgtatttcctttata 39990695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 19036823 - 19036746
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  19036823 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 19036746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 20717813 - 20717890
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  20717813 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 20717890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 20762494 - 20762571
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  20762494 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 20762571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 29488060 - 29488137
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  29488060 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 29488137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 32806632 - 32806555
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||| || | || | |||||||||||  ||||||| ||| ||||| |||||||| |||||| ||||||||    
T  32806632 ataatataaattattctcttttggaatgacaccaataatatagcattgttataagcaaatttttttaagggtataatt 32806555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 33233118 - 33233041
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  33233118 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 33233041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 34285260 - 34285183
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  34285260 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 34285183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 35338414 - 35338325
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    ||||||||||||||||| || || |||||||||| |||||||  ||||| | || ||||| |||||||| || || ||  ||||||||||    
T  35338414 ataatataaattcttatcttttttaatgacaccaacaatataacattctaacagacaaatatgtttaagggtctatttgaaagtgaaaaa 35338325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 40358551 - 40358459
Alignment:
Q  21 caataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataat 111  Q
    |||||||||||||||||  | | |||||||||| || || ||| ||| || |||||||  ||| ||||||| ||||||||||||| |||||||    
T  40358551 caataatataacaaatatgacaaaaattcttatcttttttaataacatcaacaatataacattgttataggaaaatttgtttaagggtataat 40358459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 4406878 - 4406826
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || || ||||||||||  ||||| |||||||||||    
T  4406878 ataatataaattcttatctttttaaatgacaccaaaaatatggtattcttata 4406826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 4614722 - 4614774
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    |||||||||||||||||||| |||| |||||| |  ||||| |||||||||||    
T  4614722 ataatataaattcttatatttttgactgacactaaaaatatggtattcttata 4614774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 20135612 - 20135560
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || ||||||||||| |  ||||| |||||||||||    
T  20135612 ataatataaattcttatctttttgaatgacactaaaaatatggtattcttata 20135560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 39959459 - 39959408
Alignment:
Q  17 acatcaataatataacaa--ataatataaattcttatattgttgaatgacac 66  Q
    ||||||||||||||||||  |||||||||||| |||| || |||||||||||    
T  39959459 acatcaataatataacaaatataatataaattattatttttttgaatgacac 39959408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 6629203 - 6629120
Alignment:
Q  41 taaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    ||||||| |||||| || |||||||||| ||||||||||||||||||||||||||  |||||||||||| ||  ||||||||||    
T  6629203 taaattcctatattttttaatgacaccaacaatatagtattcttataggcaaattcatttaagagtatacttggaagtgaaaaa 6629120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 11420394 - 11420520
Alignment:
Q  3 tatctttttctattacatcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 100  Q
    |||||||||| || | | ||| |||||||||||||  |||||||||||||| || |||||  |||||| ||| ||| ||||||||||| ||||||| |||    
T  11420394 tatctttttcaatgataccaacaatataacaaatataatataaattcttatctttttgaacaacaccaacaaaataatattcttatagtcaaatttattt 11420493  T
Q  101 aagagtataattacaagtgaaaaatcc 127  Q
    ||  ||||||||  |||||||||||||    
T  11420494 aaatgtataattgaaagtgaaaaatcc 11420520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 16338040 - 16337975
Alignment:
Q  59 aatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    |||||||||| |||||||  |||||||||| ||||||||||||||||| ||| || ||||||||||    
T  16338040 aatgacaccaacaatatatcattcttatagacaaatttgtttaagagtgtaagtaaaagtgaaaaa 16337975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 15920145 - 15920045
Alignment:
Q  14 attacatcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataat 111  Q
    |||||| |||||||||||||||||  ||| |||||||||| || || ||| |||||| |||||||  ||| ||||| | ||||||||||||| |||||||    
T  15920145 attacaacaataatataacaaatataataaaaattcttatcttttt-aataacaccaacaatataacattattataagaaaatttgtttaagggtataat 15920047  T
Q  112 ta 113  Q
    ||    
T  15920046 ta 15920045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 27748260 - 27748183
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||| |||||||||||| |||||| ||||||  ||||| |||||||||||   |||||||||  |||||||||||    
T  27748260 ataatatgaattcttatatttttgaattacaccaaaaatatggtattcttataacaaaatttgttatagagtataatt 27748183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 39443247 - 39443324
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  39443247 ataatataaattcttatatttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 39443324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 34151173 - 34151098
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataa 110  Q
    ||||||||||||||||| || || |||||||||| ||| |||| ||| |||||| ||||| | |||||| ||||||    
T  34151173 ataatataaattcttatctttttaaatgacaccaacaaaataggattattatagtcaaatctatttaagggtataa 34151098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 11876402 - 11876514
Alignment:
Q  3 tatctttttctattacatcaataatataacaaataatat---aaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtt 99  Q
    |||||||||| || ||| |||||||||||||||||  ||   ||||||||||||| || ||| ||| || |||||||  ||| ||||||  |||||| |     
T  11876402 tatctttttcaatgacaacaataatataacaaatataataaaaaattcttatattttttaatcacaacaacaatataacattattatagaaaaatttatg 11876501  T
Q  100 taagagtataatt 112  Q
    |||||||||||||    
T  11876502 taagagtataatt 11876514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 11891409 - 11891521
Alignment:
Q  3 tatctttttctattacatcaataatataacaaataatat---aaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtt 99  Q
    |||||||||| || ||| |||||||||||||||||  ||   ||||||||||||| || ||| ||| || |||||||  ||| ||||||  |||||| |     
T  11891409 tatctttttcaatgacaacaataatataacaaatataataaaaaattcttatattttttaatcacaacaacaatataacattattatagaaaaatttatg 11891508  T
Q  100 taagagtataatt 112  Q
    |||||||||||||    
T  11891509 taagagtataatt 11891521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 2185104 - 2185027
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || |||| |||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  2185104 ataatataaattcttatctttttgactgacactaaaaatatggtattcttataacaaaatttgttgtagagtataatt 2185027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 8082802 - 8082923
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaa 134  Q
    |||||| ||||| |||| || |||||||||| ||  ||||||  ||| ||||| | ||||||||||| | ||||||||  ||||||||||  |||| |||    
T  8082802 ataatagaaatttttatctttttgaatgacaacaaaaatataacatttttatatgtaaatttgtttatgggtataattgaaagtgaaaaagtcatcccaa 8082901  T
Q  135 aa-ccttgtattctctttatat 155  Q
    || |  ||||||||||||||||    
T  8082902 aatcaatgtattctctttatat 8082923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 20666084 - 20666007
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  20666084 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 20666007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 30551446 - 30551369
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  30551446 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 30551369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 32675896 - 32675855
Alignment:
Q  71 aatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||| ||||||||||||||| |||||||||| ||||||||    
T  32675896 aatataatattcttataggcaagtttgtttaagggtataatt 32675855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 39201106 - 39201155
Alignment:
Q  38 atataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| ||||| |||||||  ||||| |||||||||||    
T  39201106 atataaattcttatatttttgaaagacaccaaaaatatggtattcttata 39201155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 44216196 - 44216119
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  44216196 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 44216119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 4438606 - 4438535
Alignment:
Q  25 aatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaat 94  Q
    |||||||||||||  |||||||||||||| || || ||||| |||| |||||||  |||||||||| |||||    
T  4438606 aatataacaaatataatataaattcttatcttttttaatgataccaacaatataacattcttatagacaaat 4438535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 17950085 - 17949974
Alignment:
Q  3 tatctttttctattacatcaataatataacaa--ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 100  Q
    ||||||| || || ||||||| ||||||||||  ||||||||||| ||||| || || |||||   ||  |||||| |||| ||||||| |||||||||     
T  17950085 tatctttgtcaatgacatcaacaatataacaaatataatataaatccttattttttttaatgaagtcaataatataatattattataggaaaatttgttc 17949986  T
Q  101 aagagtataatt 112  Q
    ||| ||||||||    
T  17949985 aagggtataatt 17949974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 41904356 - 41904408
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    |||||||||||||||||||| ||||| ||||| |  ||||| |||||||||||    
T  41904356 ataatataaattcttatatttttgaaagacacaaaaaatatggtattcttata 41904408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 8904952 - 8905042
Alignment:
Q  25 aatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatta 113  Q
    |||||||||||||  |||||||||||||| |||||||||||||||| ||| |||| |||||||||| |||||||| || | ||||||||||    
T  8904952 aatataacaaatatgatataaattcttatcttgttgaatgacaccagcaaaatagcattcttatagtcaaatttgatttaaagtataatta 8905042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 23914836 - 23914759
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| || |||   |||| |||||||  ||||||||||||||||||||||||||||||||||    
T  23914836 ataatataaattcttatatttttcaatattaccaacaatataacattcttataggcaaatttgtttaagagtataatt 23914759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 11694210 - 11694299
Alignment:
Q  25 aatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||  ||||||||| ||||||| ||||||||||||| ||| |||| |||||||| | |||||||| ||| ||||||||||    
T  11694210 aatataacaaatataatataaatttttatatttttgaatgacaccaacaaaatagcattcttatggtcaaatttgcttaggagtataatt 11694299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 21384631 - 21384740
Alignment:
Q  3 tatctttttctattacatcaataatataacaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaa 102  Q
    |||| ||||| || ||| ||||||||||||| |||||| ||||||||||||| || ||  |||||| |||||||| ||| ||||| | ||| ||||||||    
T  21384631 tatcgttttcaatgacaccaataatataacacataataaaaattcttatattttttaaaaacaccaacaatatagcattattatatgaaaaattgtttaa 21384730  T
Q  103 gagtataatt 112  Q
    | ||||||||    
T  21384731 gggtataatt 21384740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 3752487 - 3752606
Alignment:
Q  36 taatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaaa 135  Q
    |||||||||||||||| || || ||||||| || |||| ||||||||||||| | |||||||||||| |||| | ||  |||| |||||  || ||||||    
T  3752487 taatataaattcttatctttttaaatgacatcaacaatgtagtattcttataagaaaatttgtttaaaagtacagttggaagtaaaaaaatcaactcaaa 3752586  T
Q  136 accttgtattctctttatat 155  Q
    | | ||||||| ||||||||    
T  3752587 atcatgtattccctttatat 3752606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 23914649 - 23914560
Alignment:
Q  25 aatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||  |||||||||||||| || || ||| |||| | |||||||  |||||||||| |||||||||||||| ||||||||    
T  23914649 aatataacaaatataatataaattcttatctttttcaataacacaaacaatataacattcttatagccaaatttgtttaagggtataatt 23914560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 744915 - 744992
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||| |||| || || ||| |||||| |||||||  |||||||||| ||||||| |||||||||||||||    
T  744915 ataatataaatttttatctttttaaataacaccaacaatataacattcttatagacaaatttatttaagagtataatt 744992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 41860288 - 41860407
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaa 134  Q
    ||||||||||||||||| || || || |||| || |||||||| ||||||||| |||||||| | |||  ||||||||  ||||||||||  ||  | ||    
T  41860288 ataatataaattcttatctttttaaaggacatcaacaatatagcattcttatatgcaaatttatataaaggtataattgtaagtgaaaaagtcaggt-aa 41860386  T
Q  135 aaccttgtattctctttatat 155  Q
    |||| ||||||||||||||||    
T  41860387 aaccatgtattctctttatat 41860407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 11681636 - 11681725
Alignment:
Q  25 aatataacaaata--atataaattcttatattgttgaatgacacc-atcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||  ||||||||| ||||||| |||||||||||| ||||| |||| |||||||| | |||||||| ||| ||||||||||    
T  11681636 aatataacaaatataatataaatttttatatttttgaatgacaccaatcaa-atagcattcttatggtcaaatttgcttaggagtataatt 11681725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 7360033 - 7360113
Alignment:
Q  32 caaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| || ||||| | |||||  ||||| |||||||||||   |||||||||  |||||||||||    
T  7360033 caaataatataaattcttatctttttgaaagtcaccaaaaatatggtattcttataatgaaatttgttatagagtataatt 7360113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 19491601 - 19491681
Alignment:
Q  32 caaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| || ||||| | |||||  ||||| |||||||||||   |||||||||  |||||||||||    
T  19491601 caaataatataaattcttatctttttgaaagtcaccaaaaatatggtattcttataacgaaatttgttatagagtataatt 19491681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 35468785 - 35468718
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaa 102  Q
    |||||||||||||||||||| || | |||||||| ||| |||  |||||||||| |||||||| ||||    
T  35468785 ataatataaattcttatattttttattgacaccaacaaaataacattcttatagtcaaatttgcttaa 35468718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 27312973 - 27312897
Alignment:
Q  36 taatataaattcttatattgttgaatgacaccatcaa---tatagtattcttataggcaaatttgtttaagagtata 109  Q
    ||||||||||| |||| || ||||||||||||| |||   ||||  ||||||||||  |||||||||||||||||||    
T  27312973 taatataaatttttatctttttgaatgacaccaacaacaatataacattcttatagataaatttgtttaagagtata 27312897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 38502342 - 38502187
Alignment:
Q  3 tatctttttctattacatcaataatataacaaa---taatataaattcttatattgttgaatgacaccatcaatatagtattcttatagg-caaatttgt 98  Q
    |||||||||| || | | ||| |||||||||||   |||||||||||||||| || |||||||| ||||  || |||| |||||| |||| | |||||||    
T  38502342 tatctttttcaatgataccaacaatataacaaaatataatataaattcttatctttttgaatgataccaataaaatagcattcttgtaggtctaatttgt 38502243  T
Q  99 ttaagagtataattacaagtgaaaaatccatctcaaaaccttgtattctctttatat 155  Q
    ||| | | |||| |  |||||||||| ||| | ||||||| ||||||| ||||||||    
T  38502242 ttatgggcataactggaagtgaaaaagccagcccaaaaccatgtattc-ctttatat 38502187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 3708033 - 3708110
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  3708033 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 3708110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 7301649 - 7301588
Alignment:
Q  41 taaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaa 102  Q
    |||||||| || || |||||| |||||| ||||||| |||| |||||| |||||||||||||    
T  7301649 taaattctaatctttttgaataacaccaacaatataatatttttatagacaaatttgtttaa 7301588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 11869383 - 11869306
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  11869383 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 11869306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 12599615 - 12599503
Alignment:
Q  3 tatctttttctattacatcaataatataacaa--ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 100  Q
    |||||||||| |||| | ||||||||||||||  ||||||||||||||||| ||  | ||||||| || ||| ||| |||| |||| | |||||||  ||    
T  12599615 tatctttttcaattataccaataatataacaaatataatataaattcttatctttcttaatgacatcaacaaaataatatttttatcgtcaaatttactt 12599516  T
Q  101 aagagtataatta 113  Q
    ||  |||||||||    
T  12599515 aaaggtataatta 12599503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 35360776 - 35360699
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  35360776 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 35360699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 9740303 - 9740391
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaa 123  Q
    |||||||||||| |||| ||  ||||||||| ||  |||| |  ||| |||||| |||||||| ||||||||||||||  |||||||||    
T  9740303 ataatataaatttttatctttctgaatgacatcaagaatacaacatttttatagacaaatttgattaagagtataattggaagtgaaaa 9740391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 16573917 - 16573814
Alignment:
Q  20 tcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaag 117  Q
    ||||||||||| ||||||  ||||||||| ||||  | |||||||| ||| | ||| | | ||| |||||| |||||||||||||||||| ||||  |||    
T  16573917 tcaataatatatcaaatataatataaatttttatcattttgaatgataccttaaatgtggcatttttatagtcaaatttgtttaagagtagaattgaaag 16573818  T
Q  118 tgaa 121  Q
    ||||    
T  16573817 tgaa 16573814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 28417026 - 28416943
Alignment:
Q  25 aatataacaa--ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagt 106  Q
    ||||||||||  ||||||||||||||||| || ||||||||||||| ||| ||| || | ||||   |||||||| ||||||||    
T  28417026 aatataacaactataatataaattcttatctttttgaatgacaccaacaaaatattagttttatgatcaaatttgcttaagagt 28416943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 32226478 - 32226542
Alignment:
Q  71 aatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaaa 135  Q
    |||||| ||||||||| || ||||||||| ||| ||||||||  ||||||||||| |||| ||||    
T  32226478 aatataatattcttattggtaaatttgttgaagtgtataattgaaagtgaaaaattcatcccaaa 32226542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 155
Target Start/End: Complemental strand, 4505861 - 4505741
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaa 134  Q
    ||||||||||||||||| || ||||||||||||| ||| |||| ||| |||||| ||||| |||||||| |||||| |  || |||||||  || |  ||    
T  4505861 ataatataaattcttatctttttgaatgacaccaacaaaataggattattatagtcaaatatgtttaagggtataactggaaatgaaaaagtcagcctaa 4505762  T
Q  135 aaccttgtattctctttatat 155  Q
    |||| ||||||||||||||||    
T  4505761 aaccatgtattctctttatat 4505741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 6484782 - 6484700
Alignment:
Q  42 aaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    ||||||||||||| |||||||||||||  ||||||  ||| ||||| ||||||||||||||| ||||||||  ||||||||||    
T  6484782 aaattcttatatttttgaatgacaccaataatatataattattatatgcaaatttgtttaagggtataattggaagtgaaaaa 6484700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 47393610 - 47393501
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaa 134  Q
    ||||||||| |||||||||| ||||||||||||| |||||||  ||| ||||| | || |||||||||   |||||||| ||||||||| | ||||||||    
T  47393610 ataatataatttcttatatttttgaatgacaccaacaatataacatttttataagaaattttgtttaaagatataattaaaagtgaaaagt-catctcaa 47393512  T
Q  135 aaccttgtatt 145  Q
    || | ||||||    
T  47393511 aatcatgtatt 47393501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 47683526 - 47683473
Alignment:
Q  17 acatcaataatataacaaata--atataaattcttatattgttgaatgacacca 68  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  47683526 acatcaataatataacaaatataatataaattcttatatttttgaatgacacca 47683473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 55109954 - 55109845
Alignment:
Q  17 acatcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattac 114  Q
    ||||||||||||||| |||||  ||||||||||||||  | || | | |||||| ||| |||  |||||||||  ||||||| ||||||||||||||||     
T  55109954 acatcaataatataataaatataatataaattcttattatttttagtaacaccaacaaaataacattcttataatcaaatttatttaagagtataattaa 55109855  T
Q  115 aagtgaaaaa 124  Q
    ||||||||||    
T  55109854 aagtgaaaaa 55109845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 10214333 - 10214410
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||| ||||||||||||  ||||||||||||| ||| |||  |||||||||| ||||||| |||||| ||||||||    
T  10214333 ataatacaaattcttatatatttgaatgacaccaacaaaataacattcttatagtcaaatttatttaagggtataatt 10214410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 38940628 - 38940715
Alignment:
Q  37 aatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    ||||||||||||||| || || ||||||| ||  ||||||  ||| |||||| ||||||| |||||||||||||||  ||||||||||    
T  38940628 aatataaattcttatctttttaaatgacatcaataatataacatttttatagacaaatttatttaagagtataattttaagtgaaaaa 38940715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 6028630 - 6028703
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtat 108  Q
    ||||||||||||||||| || || ||||||||||  ||||||| |||||| || | ||||||||||||| ||||    
T  6028630 ataatataaattcttatcttttttaatgacaccaaaaatatagcattcttgtatgaaaatttgtttaagggtat 6028703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 26872090 - 26872013
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  26872090 ataatataaattcttatatttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 26872013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 46058460 - 46058383
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||| | ||||||| ||||||| ||||| |||| ||  ||| ||||| |||||||||||||| |||||||||    
T  46058460 ataatataaacttttatatttttgaatggcaccaacaatgtatcatttttatatgcaaatttgtttaaaagtataatt 46058383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 28477048 - 28477143
Alignment:
Q  19 atcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||| |||||||||||||  ||||||||||||||  | ||||| ||||||| ||| || | | ||| | || |||||||||||||||||||||||    
T  28477048 atcaaaaatataacaaatataatataaattcttattattttgaaagacaccaacaaaatggcaatctaaaagtcaaatttgtttaagagtataatt 28477143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 28715416 - 28715504
Alignment:
Q  36 taatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    |||||||||||||||| |  ||||| |||||||  ||||||  ||| ||||| ||||||||||||||| |||| |||  ||||||||||    
T  28715416 taatataaattcttatctgtttgaaagacaccaataatataacatttttataagcaaatttgtttaagggtatgattgaaagtgaaaaa 28715504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 4605803 - 4605910
Alignment:
Q  48 ttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaaaaccttgtattct 147  Q
    ||||||| ||||||||||  |  ||||| | ||||||||| ||||||||||||||| ||| | ||  |||||||| |  ||  |||||||| ||||||||    
T  4605803 ttatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaagcgtacacttggaagtgaaagagtcaattcaaaaccatgtattct 4605902  T
Q  148 ctttatat 155  Q
    ||||||||    
T  4605903 ctttatat 4605910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 24670157 - 24670062
Alignment:
Q  26 atataacaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaa 121  Q
    |||||| | ||||||||||||||||| || || ||| |||  |  ||||||  |||||||||| ||||||||||||||| |||||||  |||||||    
T  24670157 atataaaatataatataaattcttatctttttaaataacataaaaaatataacattcttatagacaaatttgtttaagaatataattgaaagtgaa 24670062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 26067343 - 26067242
Alignment:
Q  3 tatctttttctattacatcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 100  Q
    |||||||||| || ||| |||  ||||||||||||  |||||||||| |||||| |  ||||||| || ||| |||| |||||||||||||| |||||||    
T  26067343 tatctttttcaatgacaccaacgatataacaaatataatataaattcatatattttgtaatgacatcaacaa-atagcattcttataggcaagtttgttt 26067245  T
Q  101 aag 103  Q
    |||    
T  26067244 aag 26067242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 28704043 - 28704126
Alignment:
Q  38 atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaa-tttgtttaagagtataattacaagtga 120  Q
    ||||||||||| || || || |||||||||| |||||||| ||||||||| | ||| |||||||||| ||||| ||| ||||||    
T  28704043 atataaattctcatcttttttaatgacaccaacaatatagcattcttataagtaaattttgtttaagggtatatttagaagtga 28704126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 33997700 - 33997750
Alignment:
Q  3 tatctttttctattacatcaataatataacaa--ataatataaattcttat 51  Q
    |||||||||| || ||||||||||||||||||  |||||||||||||||||    
T  33997700 tatctttttcgatgacatcaataatataacaaatataatataaattcttat 33997750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 24080570 - 24080484
Alignment:
Q  26 atataacaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||| || ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  24080570 atatatcatataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 24080484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 2599504 - 2599595
Alignment:
Q  22 aataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||  ||||||||||||| ||| || ||||||||   |||||||| || ||||||||||| ||| ||| || ||||||||    
T  2599504 aataatataacaaatataatataaattcttacattttt-aatgacactgacaatatagcatccttataggcaattttatttcagggtataatt 2599595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 9097986 - 9097909
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| |||||||  ||||| |||||||||||   |||||| ||  |||||||||||    
T  9097986 ataatataaattcttatctttttgaaagacaccaaaaatatggtattcttataacgaaattttttatagagtataatt 9097909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 10262490 - 10262413
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  10262490 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 10262413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 21561965 - 21562042
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  21561965 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 21562042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 24610678 - 24610562
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaa 134  Q
    |||||| ||||||||||||| ||||||   | || |||||||  ||| ||||||||||||||||||||   |||||||  ||||||||||  ||  ||||    
T  24610678 ataatacaaattcttatatttttgaat---agcaacaatataacatttttataggcaaatttgtttaaagatataattgaaagtgaaaaagtcaaatcaa 24610582  T
Q  135 aaccttgtattctctttata 154  Q
       |||||||||||||||||    
T  24610581 tttcttgtattctctttata 24610562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 25881839 - 25881900
Alignment:
Q  36 taatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttg 97  Q
    |||||||||||||||| || ||||||||||  |  |||||||||||||||||  ||||||||    
T  25881839 taatataaattcttatctttttgaatgacatgaaaaatatagtattcttataaccaaatttg 25881900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 34664663 - 34664752
Alignment:
Q  23 ataatataacaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||| || ||||||||||||||||| || || ||||||||||  |||||  ||||||||||   |||||||||  | |||||||||    
T  34664663 ataatataccatataatataaattcttatctttttaaatgacaccaaaaatattttattcttataacaaaatttgttatacagtataatt 34664752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 41144789 - 41144712
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| || |||||||| |  ||||| |||||||||||   |||||||||  | |||||||||    
T  41144789 ataatataaattcttatatttttaaatgacacaaaaaatatggtattcttataacaaaatttgttatacagtataatt 41144712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 43329486 - 43329563
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  43329486 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 43329563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 47044846 - 47044935
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaa 124  Q
    ||||| ||||||||||| || || ||| |||||| ||| |||  |||||||||  |||||||||| ||| ||||||||  ||||||||||    
T  47044846 ataatttaaattcttatctttttcaataacaccagcaaaataacattcttataatcaaatttgttcaagggtataattgaaagtgaaaaa 47044935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 51187488 - 51187565
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || || ||||||||||  ||||| |||||||||||   |||||||||  | |||||||||    
T  51187488 ataatataaattcttatctttttaaatgacaccaaaaatatggtattcttataacaaaatttgttatacagtataatt 51187565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 51449552 - 51449629
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  51449552 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 51449629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 10582142 - 10582090
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    |||||||||||||||||||| || ||||||||||  |||||  ||||||||||    
T  10582142 ataatataaattcttatatttttaaatgacaccaaaaatatgatattcttata 10582090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 48458121 - 48458014
Alignment:
Q  17 acatcaataatataacaa--ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattac 114  Q
    ||||||| ||||||||||  |||||||||| |||||| || || ||| |||| | ||| |||| |||||||||| ||| ||| |||||  ||||||||      
T  48458121 acatcaacaatataacaaatataatataaagtcttatcttttttaataacacaaacaaaatagcattcttatagtcaagtttttttaaaggtataattgg 48458022  T
Q  115 aagtgaaa 122  Q
    ||||||||    
T  48458021 aagtgaaa 48458014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 6294660 - 6294750
Alignment:
Q  21 caataatataacaaat--aatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtata 109  Q
    |||||||||||| |||  |||||||||||||||||| || | |||||| | ||||||  ||||||||||||| ||||| ||||||||||||    
T  6294660 caataatataacgaatgtaatataaattcttatattttttattgacactaacaatattatattcttataggcgaatttatttaagagtata 6294750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 41103336 - 41103226
Alignment:
Q  45 ttcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaaaaccttgtat 144  Q
    ||||||| || |||||||||||||  ||||||||| ||||||||| | |||| |||||| ||||||||| |||| ||||| | | | ||||||  |||||    
T  41103336 ttcttatctttttgaatgacaccaataatatagtaatcttataggtatatttatttaagggtataattataagtaaaaaaacaaccccaaaacgatgtat 41103237  T
Q  145 tctctttatat 155  Q
    || ||||||||    
T  41103236 tccctttatat 41103226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 44821042 - 44821119
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || |||||||||||||  ||||| |||||||||||   |||||||||  |||||||||||    
T  44821042 ataatataaattcttatctttttgaatgacaccaaaaatatggtattcttataacaaaatttgttatagagtataatt 44821119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 6732192 - 6732293
Alignment:
Q  25 aatataacaaata-at-ataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaa 122  Q
    ||||||||||||| || |||||||||||| ||||| |||||| |||  || ||||||||||||||  |||||||||||| |  |||||||  ||||||||    
T  6732192 aatataacaaatatatgataaattcttatcttgttaaatgaccccaataaaatagtattcttataatcaaatttgtttagggatataattggaagtgaaa 6732291  T
Q  123 aa 124  Q
    ||    
T  6732292 aa 6732293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 21966298 - 21966221
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || |||||||||||||  |||||  ||||||||||   |||||||||  |||||||||||    
T  21966298 ataatataaattcttatctttttgaatgacaccaaaaatatgatattcttataacgaaatttgttatagagtataatt 21966221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 33218457 - 33218381
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || |||||||||||||  || |||| |||||||| |  ||||||||||||| ||||||||    
T  33218457 ataatataaattcttatctttttgaatgacaccaataaaatagcattcttat-gttaaatttgtttaagggtataatt 33218381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 31239141 - 31239034
Alignment:
Q  19 atcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaa 116  Q
    ||||| |||||||||||||  |||||||||||||| || || ||||| ||||  || |||| |||||||  |  ||||||||||||| ||||||||  ||    
T  31239141 atcaagaatataacaaatataatataaattcttatctttttaaatgataccaataaaatagcattcttactgtgaaatttgtttaagggtataattgaaa 31239042  T
Q  117 gtgaaaaa 124  Q
    ||||||||    
T  31239041 gtgaaaaa 31239034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 40780881 - 40780797
Alignment:
Q  19 atcaataatataacaaata-atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaa 102  Q
    ||||||| ||||||||||| |||||||||||||| || || ||| |||||| ||||||| |||| ||||||  |||||| |||||    
T  40780881 atcaatagtataacaaatatatataaattcttatcttttttaataacaccaacaatataatattattatagaaaaatttatttaa 40780797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 10428072 - 10428118
Alignment:
Q  56 ttgaatgacaccatcaatatagtattcttataggcaaatttgtttaa 102  Q
    ||||||||||||| ||| ||| ||||||||||| |||||||||||||    
T  10428072 ttgaatgacaccaacaaaataatattcttatagtcaaatttgtttaa 10428118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 7308701 - 7308624
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || || ||||||||||  ||||| |||||||||||   |||||||||  | |||||||||    
T  7308701 ataatataaattcttatctttttaaatgacaccaaaaatatggtattcttataacaaaatttgttatacagtataatt 7308624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 10427544 - 10427468
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || || ||||||| || ||| |||| |||||||| | |||||||  ||||||||||||||    
T  10427544 ataatataaattcttattttttttaatgacatcaacaaaatagcattcttat-gtcaaatttacttaagagtataatt 10427468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 11035781 - 11035845
Alignment:
Q  90 caaatttgtttaagagtataattacaagtgaaaaatccatctcaaaaccttgtattctctttatat 155  Q
    ||||||||||||||| |||||||  ||||||||| | || ||||||| | ||||||||||||||||    
T  11035781 caaatttgtttaagattataattgaaagtgaaaagt-caactcaaaatcatgtattctctttatat 11035845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 16033684 - 16033607
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| || || |||||||  ||||| |||||||||||   ||||| |||  |||||||||||    
T  16033684 ataatataaattcttatattttttaaagacaccaaaaatatggtattcttataacgaaattagttatagagtataatt 16033607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 18090835 - 18090912
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| |||||||  ||||| ||| |||||||   |||||||||  |||||||||||    
T  18090835 ataatataaattcttatctttttgaaagacaccaaaaatatggtactcttataacgaaatttgttatagagtataatt 18090912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 5541648 - 5541724
Alignment:
Q  36 taatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||| || ||||| |||||||  ||||| ||||| |||||   |||||||||  |||||||||||    
T  5541648 taatataaattcttatctttttgaaagacaccaaaaatatggtatttttataacgaaatttgttatagagtataatt 5541724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 10428265 - 10428333
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaag 103  Q
    |||||| |||||||||| || || ||  |||||| |||||||| ||||||| | |||||||||||||||    
T  10428265 ataataaaaattcttatctttttcaagaacaccaacaatatagcattcttaaaagcaaatttgtttaag 10428333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 11606873 - 11606821
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || ||||||||||| |  ||||| |||||||||||    
T  11606873 ataatataaattcttatctttttgaatgacacaaaaaatatggtattcttata 11606821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 19269483 - 19269554
Alignment:
Q  59 aatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattaca--agtgaaaaatcca 128  Q
    |||||||| ||| ||||| |||| ||| ||| ||||||||||||| ||||||||| |  |||||||||||||    
T  19269483 aatgacactatcgatataatattattagaggaaaatttgtttaagggtataattagaatagtgaaaaatcca 19269554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 28569247 - 28569195
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    |||||||||||||||||||| || ||||||| ||  ||||| |||||||||||    
T  28569247 ataatataaattcttatatttttaaatgacatcaaaaatatggtattcttata 28569195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 39729454 - 39729402
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  39729454 ataatataaattcttatctttttaaatgacaccaaaaatataatattcttata 39729402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 46040813 - 46040761
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || || ||||||||||  ||||| |||||||||||    
T  46040813 ataatataaattcttatctttttaaatgacaccaaaaatatggtattcttata 46040761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 47410976 - 47410886
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaa-tttgtttaagagtataattacaagtgaaaaa 124  Q
    ||||||||||||||||| || || ||| |||||| ||| |||  |||||||||| |||| ||||| |||||||||||||| ||||||||||    
T  47410976 ataatataaattcttatcttttttaataacaccaacaaaatataattcttatagtcaaaatttgtgtaagagtataattagaagtgaaaaa 47410886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 50585818 - 50585711
Alignment:
Q  19 atcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaa 116  Q
    ||||| |||||||||||||  ||||||||| |||| || |||||| |||||| ||| ||| ||||||||| | |||||||  |||| |||||||||  ||    
T  50585818 atcaacaatataacaaatataatataaatttttatctttttgaataacaccaacaaaataatattcttattgtcaaatttagttaaaagtataattggaa 50585719  T
Q  117 gtgaaaaa 124  Q
    ||||||||    
T  50585718 gtgaaaaa 50585711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 10617012 - 10617089
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || |||||||||||||  ||||| |||||||||||   |||||||||  ||| |||||||    
T  10617012 ataatataaattcttatctttttgaatgacaccaaaaatatggtattcttataacaaaatttgttatagattataatt 10617089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 47410517 - 47410602
Alignment:
Q  38 atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaa 123  Q
    |||||||||||||| || |||||||||||||  || |||  ||| |||||| |||||||||||||  ||||||||  |||||||||    
T  47410517 atataaattcttatctttttgaatgacaccaataaaatatcatttttatagtcaaatttgtttaattgtataattgaaagtgaaaa 47410602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 51103228 - 51103281
Alignment:
Q  53 ttgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagt 106  Q
    |||||||||||||| | |||||||  ||||||||| ||||||||||||||||||    
T  51103228 ttgttgaatgacactaacaatataacattcttatatgcaaatttgtttaagagt 51103281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 7534107 - 7534019
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaa 123  Q
    |||||||| ||||||||||| |||||  |||| | |||| |||  ||||||||| |||||||||| ||| ||||||||  |||||||||    
T  7534107 ataatatacattcttatatttttgaaaaacacaaacaatgtagctttcttatagacaaatttgttcaagggtataattggaagtgaaaa 7534019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 21190403 - 21190479
Alignment:
Q  79 attcttataggcaaatttgtttaagagtataattacaagtgaaaaatccatctcaaaaccttgtattctctttatat 155  Q
    |||||||||| ||||||| ||||||| |||||||  |||||||||| | | | ||||||| | ||||||||||||||    
T  21190403 attcttatagacaaatttatttaagaatataattgtaagtgaaaaaactaccccaaaaccatctattctctttatat 21190479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 37681442 - 37681331
Alignment:
Q  3 tatctttttctattacatcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 100  Q
    |||||||||| || ||| ||||||| |||||||||  |||||||| ||||| || || |||  ||||| |||||||  |||  |||||| ||||||||||    
T  37681442 tatctttttcaataacaacaataatttaacaaatataatataaatccttatcttttttaataccaccaacaatataacattaatataggaaaatttgttt 37681343  T
Q  101 aagagtataatt 112  Q
    ||| ||||||||    
T  37681342 aagggtataatt 37681331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 54796531 - 54796479
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    |||||||||||| ||||||| |||||||||||||  ||||| |||||||||||    
T  54796531 ataatataaatttttatatttttgaatgacaccaaaaatatggtattcttata 54796479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 2594551 - 2594462
Alignment:
Q  25 aatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||  |||||||||||||| || ||||||||||||| ||| |||  ||| |||| | |||||||| ||||| || |||||    
T  2594551 aatataacaaatataatataaattcttatctttttgaatgacaccagcaaaataacattgttatggtcaaatttgattaagggtgtaatt 2594462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 915857 - 915934
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  915857 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 915934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 12170973 - 12170896
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| ||||| || ||||  ||||| |||||||||||   ||||| |||  |||||||||||    
T  12170973 ataatataaattcttatatttttgaaagagaccaagaatatcgtattcttataacgaaattcgttatagagtataatt 12170896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 18390538 - 18390485
Alignment:
Q  59 aatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||| || ||| ||| |||| |||||| |||||||||||||||||||||||    
T  18390538 aatgacatcaacaaaataatatttttatagtcaaatttgtttaagagtataatt 18390485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 22518751 - 22518702
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattctt 84  Q
    ||||||||||||||||| || || ||||||||||  ||||||||||||||    
T  22518751 ataatataaattcttatgtttttaaatgacaccaaaaatatagtattctt 22518702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 22762779 - 22762702
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| || || |||||||  |||||  ||||||||||   |||||||||  |||||||||||    
T  22762779 ataatataaattcttatatttttcaaagacaccaaaaatatgatattcttataacgaaatttgttatagagtataatt 22762702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 42188470 - 42188393
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || |||| |||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  42188470 ataatataaattcttatctttttgactgacactaaaaatatggtattcttataacaaaatttgttatagagtataatt 42188393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 44075877 - 44075800
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  44075877 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 44075800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 30268313 - 30268257
Alignment:
Q  56 ttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||| | |||||| ||| |||||  |||||||||||||| ||||||||    
T  30268313 ttgaatgacaccaaccatatagcatttttatatacaaatttgtttaagggtataatt 30268257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 37413173 - 37413225
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || || ||||||||||  ||||| |||||||||||    
T  37413173 ataatataaattcttatctttttaaatgacaccaaaaatatggtattcttata 37413225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 43317103 - 43317051
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || || ||||||||||  ||||| |||||||||||    
T  43317103 ataatataaattcttatctttttaaatgacaccaaaaatatggtattcttata 43317051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 33803895 - 33803983
Alignment:
Q  35 ataatataaattcttat-attgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaa 122  Q
    |||||||||||||||||  || || |||||||||| |||||||| ||||||||| ||| ||||| ||||| ||||||||  ||||||||    
T  33803895 ataatataaattcttatctttttttaatgacaccaacaatatagcattcttatatgcatatttgattaagggtataattgaaagtgaaa 33803983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 11518983 - 11518903
Alignment:
Q  32 caaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| || ||||| | |||||  ||||| |||||||||||   |||||||||  |||||||||||    
T  11518983 caaataatataaattcttatctttttgaaagtcaccaaaaatatggtattcttataatgaaatttgttatagagtataatt 11518903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 10129708 - 10129799
Alignment:
Q  35 ataatataaattcttata-ttgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaaaat 125  Q
    |||||||||||||||||| || || |||||||| | | ||||||  || |||||  |||||||||||||| ||||||||| |||| ||||||    
T  10129708 ataatataaattcttataattttttaatgacactaactatatagcctttttatacacaaatttgtttaagggtataattaaaagtaaaaaat 10129799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 12582950 - 12582872
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatta 113  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  ||||||||||||    
T  12582950 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatta 12582872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 14224571 - 14224657
Alignment:
Q  36 taatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataattacaagtgaaa 122  Q
    ||||| ||||||||||||| || ||||| | || ||||||| |||||||| | |||||||| |||||  ||||||||  ||||||||    
T  14224571 taatacaaattcttatatttttaaatgatatcaacaatatattattcttacatgcaaatttatttaatggtataattgaaagtgaaa 14224657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 16260364 - 16260434
Alignment:
Q  33 aaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaag 103  Q
    ||||||||||||||  |||  | || |||||||||| ||||||| |||| ||||||| |||||||||||||    
T  16260364 aaataatataaattaatatcatttttaatgacaccaacaatataatattattataggaaaatttgtttaag 16260434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 246999 - 247076
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  246999 ataatataaattcttatctttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 247076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 1930793 - 1930870
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| ||||| || |||   ||||| |||||||||||   |||||||||  |||||||||||    
T  1930793 ataatataaattcttatatttttgaaagagaccgaaaatatggtattcttataacgaaatttgttatagagtataatt 1930870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 3091012 - 3090935
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||| ||| ||||| |||||||  |||||| ||||||||||   |||||||||  |||||| ||||    
T  3091012 ataatataaattcttagatttttgaaagacaccaaaaatataatattcttataacgaaatttgttatagagtacaatt 3090935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 4119095 - 4119207
Alignment:
Q  3 tatctttttctattacatcaataatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 100  Q
    |||||||||| || ||| ||| || ||||||||||  ||||||||||| || || || |||||||| | ||||| || ||| |||||   ||||||||||    
T  4119095 tatctttttcaataacaccaacaacataacaaatacaatataaattctaatcttttttaatgacacaaacaataaagcattattataacaaaatttgttt 4119194  T
Q  101 aagagtataatta 113  Q
    ||| |||||||||    
T  4119195 aagggtataatta 4119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 18313581 - 18313658
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| || || |||||||  |||||  ||||||||||   |||||||||  |||||||||||    
T  18313581 ataatataaattcttatatttttcaaagacaccaaaaatatgatattcttataacgaaatttgttatagagtataatt 18313658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 3533315 - 3533205
Alignment:
Q  3 tatctttttctattacatcaataatataacaa--ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttt 100  Q
    |||||||| | || ||||||||||||||| ||  ||||||| | ||||||| || || ||| |||||| ||||||| |||| ||||||  ||||||||||    
T  3533315 tatcttttccaatgacatcaataatataaaaaatataatatgatttcttattttttttaataacaccaacaatataatatt-ttatagaaaaatttgttt 3533217  T
Q  101 aagagtataatt 112  Q
    ||| || |||||    
T  3533216 aagggtctaatt 3533205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 28231664 - 28231612
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || ||||| |||||||  ||||| |||||||||||    
T  28231664 ataatataaattcttatctttttgaaagacaccaaaaatatggtattcttata 28231612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1793 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1793
Description:

Target: scaffold1793; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 562 - 652
Alignment:
Q  22 aataatataacaaataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||| ||| || |||||||||||||||||||| || ||||||||||  ||||| |||||||||||   |||||||||  | |||||||||    
T  562 aataaaatatcatataatataaattcttatattttttaatgacaccaaaaatatggtattcttataacaaaatttgttataaagtataatt 652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 65595 - 65506
Alignment:
Q  25 aatataacaaata--atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||  |||||||||||||| || |||||||| |||| ||| ||| |||| |||||| || ||||  ||||||||||||||    
T  65595 aatataacaaatataatataaattcttatctttttgaatgataccaacaaaataatatttttatagtcagattttcttaagagtataatt 65506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 7410 - 7333
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    |||||||||||||||||||| ||||| ||||| |  ||||| |||||||||||   |||||||||  |||||||||||    
T  7410 ataatataaattcttatatttttgaaagacacaaaaaatatggtattcttataacgaaatttgttatagagtataatt 7333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 97107 - 96998
Alignment:
Q  3 tatctttttctattacatcaataatataacaaata-atataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgttta 101  Q
    |||||||||| || ||| ||||||||||||||||| |   |||||||||| || || ||| |||||| ||||||| |||| |||||   |||||||||||    
T  97107 tatctttttcaatgacaacaataatataacaaatataacaaaattcttat-ttttttaatcacaccaacaatataatattattataaaaaaatttgttta 97009  T
Q  102 agagtataatt 112  Q
    || ||||||||    
T  97008 agggtataatt 96998  T

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Target: scaffold0078 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 5895 - 5818
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttataggcaaatttgtttaagagtataatt 112  Q
    ||||||||||||||||| || |||||| |||| |  |||||||||||||||||   ||| |||||  |||||||||||    
T  5895 ataatataaattcttatctttttgaatcacacaaaaaatatagtattcttataacgaaagttgttatagagtataatt 5818  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 14617 - 14565
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    |||||||||||||||||||| |||||  ||||||  ||||| |||||||||||    
T  14617 ataatataaattcttatatttttgaaacacaccaaaaatatggtattcttata 14565  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 32161 - 32109
Alignment:
Q  35 ataatataaattcttatattgttgaatgacaccatcaatatagtattcttata 87  Q
    ||||||||||||||||| || ||||| |||||||  ||||| |||||||||||    
T  32161 ataatataaattcttatctttttgaaagacaccaaaaatatggtattcttata 32109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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