View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_49 (Length: 249)
Name: NF16256_low_49
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 31714537 - 31714315
Alignment:
| Q |
15 |
cataaatcaaacaatggaataattcaaaatgaattaacc-aacaacaatgaacactttaccttcaacaaaatggcatcagctggaggaattctctcaaac |
113 |
Q |
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| T |
31714537 |
cataaatcaaacaatggaataattcaaaatgaattaacccaacatcatagaacactttaccttcaacaaaatagcatcagctggaggaattctcttaaac |
31714438 |
T |
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| Q |
114 |
atgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaacatgtggaagatcaaacacagtgcggtccatttgtgggaatgatttgg |
213 |
Q |
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| T |
31714437 |
atatctccaccaacatagtttaagttatcacctccttgcaagccatcaacaacatgtggaagatcaaacacagtgcactctaattgtgggaatgatttgg |
31714338 |
T |
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| Q |
214 |
caagagcctttgccatggtccct |
236 |
Q |
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| T |
31714337 |
caagagcctttgccatggtccct |
31714315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 31711513 - 31711347
Alignment:
| Q |
69 |
tttaccttcaacaaaatggcatcagctggaggaattctctcaaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaacat |
168 |
Q |
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| T |
31711513 |
tttaccttcaacaaaattgcatctgctggtggaatttccttaaacatgtctccaccaacatatcttagcttttcacttccttgcaagccatcaacaacat |
31711414 |
T |
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| Q |
169 |
gtggaagatcaaacacagtgcggtccatttgtgggaatgatttggcaagagcctttgccatggtccc |
235 |
Q |
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| T |
31711413 |
gtggaagatcaaacacaatgcactccatttgtgggaatgatttgacaagagtctttgccatggtccc |
31711347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 31684539 - 31684373
Alignment:
| Q |
70 |
ttaccttcaacaaaatggcatcagctggaggaattctctcaaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaacatg |
169 |
Q |
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| T |
31684539 |
ttaccttcaacaaaattgcagctgttggcggaatttctttaaacatgtctccaccaacatagtttaagttttcacttcctagcaaaccatcaacaacatg |
31684440 |
T |
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| Q |
170 |
tggaagatcaaacacagtgcggtccatttgtgggaatgatttggcaagagcctttgccatggtccct |
236 |
Q |
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| T |
31684439 |
tggaagatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccct |
31684373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 31703084 - 31702912
Alignment:
| Q |
64 |
aacactttaccttcaacaaaatggcatcagctggaggaattctctcaaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaac |
163 |
Q |
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|||| |||||||||||||||||||| || | |||||||||| | |||||||||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
31703084 |
aacattttaccttcaacaaaatggcgtctgttggaggaatttctttaaacatgtctccaccaacatagtttagattctcactaccttgcaagccatcaac |
31702985 |
T |
|
| Q |
164 |
aacatgtggaagatcaaacacagtgcggtccatttgtgggaatgatttggcaagagcctttgccatggtccct |
236 |
Q |
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| T |
31702984 |
aacatgtggtagatcaaatacactaaactccatttgtgggaatgatttagcaagggcctttgccatggtccct |
31702912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 31734921 - 31734752
Alignment:
| Q |
67 |
actttaccttcaacaaaatggcatcagctggaggaattctctcaaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaac |
166 |
Q |
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| T |
31734921 |
actttaccttcaacagaattgcatcggttggcggaatttctttaaacatgtctccaccaacatagcttagattctcacttccttgcaaaccatcaacaac |
31734822 |
T |
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| Q |
167 |
atgtggaagatcaaacacagtgcggtccatttgtgggaatgatttggcaagagcctttgccatggtccct |
236 |
Q |
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|||||| |||||||||||| ||| ||||||||||||||||||||||||| || ||||||||| |||||| |
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| T |
31734821 |
atgtggtagatcaaacacaatgcactccatttgtgggaatgatttggcaaaagtctttgccatagtccct |
31734752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 30570461 - 30570387
Alignment:
| Q |
107 |
ctcaaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaacatgtggaagatcaaa |
181 |
Q |
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| T |
30570461 |
ctcaaacatgtcacctccaacatattttaagttttcacttccttgtaagccatcaacaacatgtggaagatcaaa |
30570387 |
T |
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