View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_50 (Length: 247)
Name: NF16256_low_50
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 55298167 - 55298402
Alignment:
| Q |
1 |
ctccattgttgtgacaacatatgctcttgtcatagatttggaatggaagctcatctatgttggatctgctgaggatgagacttatgaccagttattggag |
100 |
Q |
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| T |
55298167 |
ctccattgttgtgacaacatatgctcttgtcatagatttggaatggaagctcatctatgttggatctgctgaggatgagacttatgaccagttattggag |
55298266 |
T |
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| Q |
101 |
agtgtccttgttggtcctgtcaatgttggaaactatcgctttgttttacaggcaatcatctcctttatcaattctgttgccacttcttataaataaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55298267 |
agtgtccttgttggtcctgtcaatgttggaaactatcgctttgttttacaggcaatcatctcctttatcaattctgttgccacttcttataaataaatat |
55298366 |
T |
|
| Q |
201 |
atataatattcaaccttatcaattctcttctctttt |
236 |
Q |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
55298367 |
atataatattcaaccttaacaattctcttctctttt |
55298402 |
T |
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