View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16256_low_51 (Length: 245)

Name: NF16256_low_51
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16256_low_51
NF16256_low_51
[»] chr7 (6 HSPs)
chr7 (16-229)||(39358812-39359024)
chr7 (80-229)||(39344236-39344385)
chr7 (80-225)||(39543363-39543508)
chr7 (80-229)||(39552586-39552735)
chr7 (88-229)||(39569432-39569573)
chr7 (80-229)||(39332966-39333115)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 39359024 - 39358812
Alignment:
Q  16 aagaatgataagcatagaaatcagcacatctcttttaaaatcacaagagaaacaannnnnnnngttgaattcgaacctatccattcgatccttaagtttg 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  39359024 aagaatgataagcatagaaatcagcacaactcttttaaaatcacaagagaaacaatttttttt-ttgaattcgaacctatccattcgatccttaagtttg 39358926  T
Q  116 agcagaaacttctcattgtcttcttcagcaagtctaacaagcctttcaagtaaatcttttctttcttgcaacccaagcttctcaacatcaacctcggtgg 215  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39358925 agcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaacccaagcttctcaacatcaacctcggtgg 39358826  T
Q  216 cttccccttgaagt 229  Q
    ||||||||||||||    
T  39358825 cttccccttgaagt 39358812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 39344385 - 39344236
Alignment:
Q  80 ttgaattcgaacctatccattcgatccttaagtttgagcagaaacttctcattgtcttcttcagcaagtctaacaagcctttcaagtaaatcttttcttt 179  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||     
T  39344385 ttgaatttgaacctgtccatgcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctta 39344286  T
Q  180 cttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39344285 cttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagt 39344236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 39543363 - 39543508
Alignment:
Q  80 ttgaattcgaacctatccattcgatccttaagtttgagcagaaacttctcattgtcttcttcagcaagtctaacaagcctttcaagtaaatcttttcttt 179  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  39543363 ttgaattcgaacctgtcgattcgatccttgagtttgagcaaaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatcttttcttt 39543462  T
Q  180 cttgcaacccaagcttctcaacatcaacctcggtggcttccccttg 225  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||||    
T  39543463 cttgcaacccaagcttctcaacatcgatctcagtggcttccccttg 39543508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 80 - 229
Target Start/End: Original strand, 39552586 - 39552735
Alignment:
Q  80 ttgaattcgaacctatccattcgatccttaagtttgagcagaaacttctcattgtcttcttcagcaagtctaacaagcctttcaagtaaatcttttcttt 179  Q
    |||||||  ||||| || ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39552586 ttgaattttaacctgtcgattcgatccttgagtttgagcaaaaacttttcattgtcttcttcagcaagtctaacaagtctttcaagtaaatcttttcttt 39552685  T
Q  180 cttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagt 229  Q
    ||||||||||||| ||||||||||| | ||| ||||||||||||||||||    
T  39552686 cttgcaacccaaggttctcaacatcgatctcagtggcttccccttgaagt 39552735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 39569432 - 39569573
Alignment:
Q  88 gaacctatccattcgatccttaagtttgagcagaaacttctcattgtcttcttcagcaagtctaacaagcctttcaagtaaatcttttctttcttgcaac 187  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |    
T  39569432 gaacctgtccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttcttgcagc 39569531  T
Q  188 ccaagcttctcaacatcaacctcggtggcttccccttgaagt 229  Q
    ||||||||||||| ||||| |||   ||||||||||||||||    
T  39569532 ccaagcttctcaatatcaatctcaacggcttccccttgaagt 39569573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 39333115 - 39332966
Alignment:
Q  80 ttgaattcgaacctatccattcgatccttaagtttgagcagaaacttctcattgtcttcttcagcaagtctaacaagcctttcaagtaaatcttttcttt 179  Q
    |||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| || ||||||||  |||    
T  39333115 ttgaatccgaacctgtctattcgatccttaagtttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatctttctttt 39333016  T
Q  180 cttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagt 229  Q
    |||||| |||||| ||||||||||||| |||| ||| | | |||||||||    
T  39333015 cttgcatcccaaggttctcaacatcaatctcgatggttccaccttgaagt 39332966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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