View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_52 (Length: 241)
Name: NF16256_low_52
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 55298089 - 55297860
Alignment:
| Q |
1 |
gattacatgggggagtagaacaacctaaaccctnnnnnnnnn-caagaaagtagaggattggtgccctaaataactaacaaaattaggtcaaatttggga |
99 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55298089 |
gattacatgggggagtagaacaacctaaaccctaaaataaaaacaagaaa--agaggattggtgccctaaataactaacaaaattaggtcaaatttggga |
55297992 |
T |
|
| Q |
100 |
acagaaacaagatctgaaaagaaaaaccctaaaccctaacctaacacagcgaaaacg------aaaattgaagatctaaagcaagataaatgaagaaatg |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55297991 |
acagaaacaagatctgaaaagaaaaaccctaaaccctaacctaacagagcgaaaacgaaaacgaaaattgaagatctaaagcaagataaatgaagaaatg |
55297892 |
T |
|
| Q |
194 |
aattaggttagaaaagtagtagagtaaagaga |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
55297891 |
aattaggttagaaaagtagtagagtaaagaga |
55297860 |
T |
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