View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16256_low_6 (Length: 518)
Name: NF16256_low_6
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16256_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 300 - 508
Target Start/End: Original strand, 28203373 - 28203579
Alignment:
| Q |
300 |
atttgttgtgtttgcatctattgattagggagaagcaaagccaagacacgtgtgattcacagaaactctaagttatggttgagtgacacgcaactatatg |
399 |
Q |
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| T |
28203373 |
atttgttgtgtttgcatc-attgataagggagaagcaaagccaagacacgtgtgattcacagaaactctaagttatggttgagtgacacgcaactatatg |
28203471 |
T |
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| Q |
400 |
tgttggacaaatttaacatattattgacaacaaagaatattacttattttatctgtcttattatatgcctagtttaagattacacactacttttaaaaaa |
499 |
Q |
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| T |
28203472 |
tgttggacaaa-ttaacatattattgacaacacaaaatattacttattttatctgtcttattataagcctagtttaagattacacactacttttaaaaaa |
28203570 |
T |
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| Q |
500 |
taccctatg |
508 |
Q |
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| T |
28203571 |
taccctatg |
28203579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 28203167 - 28203266
Alignment:
| Q |
19 |
acaaagaaacaagttgaggctgctgatgctgctgaacatatcaagaatagactcaatgatcctcatag-taattaattaaattaatgtttagtaattttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
28203167 |
acaaagaaacaagttgaggctgctgatgctgctgaacatatcaagaatagactcaatgatcctcatagttagttaattaaattaatgtttagtaattttc |
28203266 |
T |
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