View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16256_low_7 (Length: 516)

Name: NF16256_low_7
Description: NF16256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16256_low_7
NF16256_low_7
[»] chr8 (6 HSPs)
chr8 (16-230)||(2499093-2499307)
chr8 (403-509)||(2499481-2499587)
chr8 (172-232)||(2504197-2504257)
chr8 (456-508)||(2503937-2503989)
chr8 (173-211)||(1080849-1080887)
chr8 (403-437)||(2503989-2504023)
[»] chr7 (4 HSPs)
chr7 (415-504)||(9805734-9805823)
chr7 (411-497)||(9691553-9691642)
chr7 (179-232)||(9806752-9806805)
chr7 (172-232)||(9691801-9691861)
[»] chr3 (4 HSPs)
chr3 (411-504)||(12215720-12215813)
chr3 (171-232)||(13810828-13810889)
chr3 (411-464)||(13811069-13811122)
chr3 (176-232)||(12215992-12216050)
[»] scaffold0008 (2 HSPs)
scaffold0008 (411-504)||(116059-116155)
scaffold0008 (173-232)||(116313-116372)
[»] scaffold0186 (2 HSPs)
scaffold0186 (420-504)||(30520-30607)
scaffold0186 (172-232)||(31298-31358)
[»] chr4 (3 HSPs)
chr4 (411-497)||(13557930-13558019)
chr4 (172-232)||(13558178-13558238)
chr4 (173-232)||(42140046-42140105)
[»] chr6 (2 HSPs)
chr6 (173-232)||(22042822-22042881)
chr6 (420-504)||(22043048-22043135)
[»] chr2 (2 HSPs)
chr2 (173-232)||(44353201-44353260)
chr2 (420-504)||(44353427-44353514)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 2499093 - 2499307
Alignment:
Q  16 gaatgaagataagttaagctaaattataaaagttgaatcatcatcatgctgtaaagtggaatgaatgaatggctgcaagtagcaacacgctaatgcactt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2499093 gaatgaagataagttaagctaaattataaaagttgaatcatcatcatgctgtaaagtggaatgaatgaatggctgcaagtagcagcacgctaatgcactt 2499192  T
Q  116 tagttacttgttatatttgattagtttaaactttaaattagagcctcattttaattaggaaaaagatacatggacataccaattccatacaccccctcat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  2499193 tagttacttgttatatttgattagtttaaactttaaattagagcctcattttaattaggaaaaagatagatggacataccaattccatacacctcctcat 2499292  T
Q  216 accacctatgacatg 230  Q
    |||||||||||||||    
T  2499293 accacctatgacatg 2499307  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 403 - 509
Target Start/End: Original strand, 2499481 - 2499587
Alignment:
Q  403 gccatttgcgacggccaatagctctctctccgtcatttgctccgacggcccgtagctctctctccataccctggttagctctctcgatctccttcctcct 502  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2499481 gccatttgcgacggccaatagctctttctccgtcatttgctccgacggcccgtagctctctctccataccctggttagctctctcgatctccttcctcct 2499580  T
Q  503 tcatctc 509  Q
    |||||||    
T  2499581 tcatctc 2499587  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 2504257 - 2504197
Alignment:
Q  172 aggaaaaagatacatggacataccaattccatacaccccctcataccacctatgacatggc 232  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504257 aggaaaaagatagatggacataccaattccatacaccccctcataccacctatgacatggc 2504197  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 456 - 508
Target Start/End: Complemental strand, 2503989 - 2503937
Alignment:
Q  456 agctctctctccataccctggttagctctctcgatctccttcctccttcatct 508  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  2503989 agctctctctccaaactctggttagctctctcgatctccttcctccttcatct 2503937  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 1080849 - 1080887
Alignment:
Q  173 ggaaaaagatacatggacataccaattccatacaccccc 211  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  1080849 ggaaaaagatagatggacataccaattccatacaccccc 1080887  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 2504023 - 2503989
Alignment:
Q  403 gccatttgcgacggccaatagctctctctccgtca 437  Q
    ||||||||||||| |||||||||||||||||||||    
T  2504023 gccatttgcgacgaccaatagctctctctccgtca 2503989  T

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Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 415 - 504
Target Start/End: Complemental strand, 9805823 - 9805734
Alignment:
Q  415 ggccaatagctctctctccgtcatttgctccgacggcccgtagctctctctccataccctggttagctctctcgatctccttcctccttc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  9805823 ggccaatagctctctctccgtcatttgctccgacggcccgtaattctctctccataccctgattagctctctcgatctccttcctccttc 9805734  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 411 - 497
Target Start/End: Complemental strand, 9691642 - 9691553
Alignment:
Q  411 cgacggccaatagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccctggttagctctctcgatctccttc 497  Q
    |||||||  |||||||||||||||||||||| |||||||||   |||||||||||||||||||||||| |||||||||||||||||||||    
T  9691642 cgacggcagatagctctctctccgtcatttggtccgacggcggcccgtagctctctctccataccctgattagctctctcgatctccttc 9691553  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 9806805 - 9806752
Alignment:
Q  179 agatacatggacataccaattccatacaccccctcataccacctatgacatggc 232  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9806805 agatacatggacataccaattccatacacccgctcataccacctatgacatggc 9806752  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 9691861 - 9691801
Alignment:
Q  172 aggaaaaagatacatggacataccaattccatacaccccctcataccacctatgacatggc 232  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  9691861 aggaaaaagatacatggacataccaattccatacatccccttataccatctatgacatggc 9691801  T

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Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 411 - 504
Target Start/End: Complemental strand, 12215813 - 12215720
Alignment:
Q  411 cgacggccaatagctctctctccgtcatttgctccgacggcccgtagctctctctccataccctggttagctctctcgatctccttcctccttc 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||  ||||||||||||||||||    
T  12215813 cgacggccaatagctctctctccgtcatttgctccgacggcccgtagctctctctccataccgtgattagctcttccgatctccttcctccttc 12215720  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 13810828 - 13810889
Alignment:
Q  171 taggaaaaagatacatggacataccaattccatacaccccctcataccacctatgacatggc 232  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13810828 taggaaaaagatacatggacataccaattccatacacccccttataccacctatgacatggc 13810889  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 13811069 - 13811122
Alignment:
Q  411 cgacggccaatagctctctctccgtcatttgctccgacggcccgtagctctctc 464  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||    
T  13811069 cgacggcgaatatctctctctccatcatttgctccgacggcccgtagctctctc 13811122  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 12216050 - 12215992
Alignment:
Q  176 aaaagatacatggacataccaattccatacac--cccctcataccacctatgacatggc 232  Q
    ||||||||||||||||||||||||||||||||  ||||| ||| |||||||||||||||    
T  12216050 aaaagatacatggacataccaattccatacacccccccttatatcacctatgacatggc 12215992  T

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Target: scaffold0008 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 411 - 504
Target Start/End: Complemental strand, 116155 - 116059
Alignment:
Q  411 cgacggccaatagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccctggttagctctctcgatctccttcctccttc 504  Q
    |||||||| |||||||||||||||||||||| |||||||||   ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  116155 cgacggccgatagctctctctccgtcatttggtccgacggcggcccgtagctctctctccatagcctgattagctctctcgatctccttcctccttc 116059  T

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Target: scaffold0008; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 116372 - 116313
Alignment:
Q  173 ggaaaaagatacatggacataccaattccatacaccccctcataccacctatgacatggc 232  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  116372 ggaaaaagatacatggacataccaattccatacacccccttataccacctatgacatggc 116313  T

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Target: scaffold0186 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 420 - 504
Target Start/End: Complemental strand, 30607 - 30520
Alignment:
Q  420 atagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccctggttagctctctcgatctccttcctccttc 504  Q
    |||||||||||||||||||||| |||||||||   |||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  30607 atagctctctctccgtcatttggtccgacggcggcccgtagctctctctacataccctgattagctctctcgatctccttcctccttc 30520  T

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Target: scaffold0186; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 31358 - 31298
Alignment:
Q  172 aggaaaaagatacatggacataccaattccatacaccccctcataccacctatgacatggc 232  Q
    |||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||    
T  31358 aggaaaaagatacatggacataccaatttcatacacccctttataccgcctatgacatggc 31298  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 411 - 497
Target Start/End: Complemental strand, 13558019 - 13557930
Alignment:
Q  411 cgacggccaatagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccctggttagctctctcgatctccttc 497  Q
    |||||||  |||||||||||||||||||||| |||||||||   |||||||||||||||||||||||| |||||||||||||||||||||    
T  13558019 cgacggcagatagctctctctccgtcatttggtccgacggcggcccgtagctctctctccataccctgattagctctctcgatctccttc 13557930  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 13558238 - 13558178
Alignment:
Q  172 aggaaaaagatacatggacataccaattccatacaccccctcataccacctatgacatggc 232  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  13558238 aggaaaaagatacatggacataccaattccatacatccccttataccatctatgacatggc 13558178  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 42140046 - 42140105
Alignment:
Q  173 ggaaaaagatacatggacataccaattccatacaccccctcataccacctatgacatggc 232  Q
    |||||||||||||| |||| ||||||  ||||||||| || |||||||| ||||||||||    
T  42140046 ggaaaaagatacatagacacaccaatgtcatacaccctcttataccacccatgacatggc 42140105  T

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Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 22042822 - 22042881
Alignment:
Q  173 ggaaaaagatacatggacataccaattccatacaccccctcataccacctatgacatggc 232  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22042822 ggaaaaagatacatggacataccaattccatacacccccttataccacctatgacatggc 22042881  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 420 - 504
Target Start/End: Original strand, 22043048 - 22043135
Alignment:
Q  420 atagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccctggttagctctctcgatctccttcctccttc 504  Q
    ||||||||||||  |||||||| |||||||||   |||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  22043048 atagctctctctttgtcatttggtccgacggcggcccgtagctctctctccataccctgattagctctctcgatttccttcctccttc 22043135  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 44353201 - 44353260
Alignment:
Q  173 ggaaaaagatacatggacataccaattccatacaccccctcataccacctatgacatggc 232  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44353201 ggaaaaagatacatggacataccaattccatacacccccttataccacctatgacatggc 44353260  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 420 - 504
Target Start/End: Original strand, 44353427 - 44353514
Alignment:
Q  420 atagctctctctccgtcatttgctccgacggc---ccgtagctctctctccataccctggttagctctctcgatctccttcctccttc 504  Q
    ||||||||||||  |||||||| |||||||||   |||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  44353427 atagctctctctttgtcatttggtccgacggcggcccgtagctctctctccataccctgattagctctctcgatttccttcctccttc 44353514  T

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