View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16257_high_1 (Length: 940)

Name: NF16257_high_1
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16257_high_1
NF16257_high_1
[»] chr8 (4 HSPs)
chr8 (19-921)||(26494418-26495320)
chr8 (475-679)||(26506901-26507105)
chr8 (18-381)||(26506462-26506825)
chr8 (494-591)||(41127308-41127405)
[»] chr5 (2 HSPs)
chr5 (494-609)||(15176287-15176402)
chr5 (215-282)||(15176593-15176660)
[»] chr2 (14 HSPs)
chr2 (326-439)||(2327134-2327247)
chr2 (494-610)||(2330996-2331112)
chr2 (497-610)||(2303729-2303842)
chr2 (494-610)||(2327281-2327397)
chr2 (317-381)||(2330840-2330904)
chr2 (335-439)||(2351164-2351268)
chr2 (494-610)||(2310444-2310560)
chr2 (494-593)||(2321428-2321527)
chr2 (317-439)||(2303570-2303692)
chr2 (494-610)||(2294113-2294229)
chr2 (317-369)||(2321272-2321324)
chr2 (208-282)||(2293848-2293922)
chr2 (630-679)||(2294246-2294295)
chr2 (630-679)||(2310577-2310626)
[»] chr4 (1 HSPs)
chr4 (494-540)||(55017087-55017133)


Alignment Details
Target: chr8 (Bit Score: 847; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 19 - 921
Target Start/End: Original strand, 26494418 - 26495320
Alignment:
Q  19 gttacctgaggagaaacggaagcttaacgaaggtgaagttgttgcactatgttccgagtttctcaccgcaggaactgacacaacttcaactacactagag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494418 gttacctgaggagaaacggaagcttaacgaaggtgaagttgttgcactatgttccgagtttctcaccgcaggaactgacacaacttcaactacactagag 26494517  T
Q  119 tgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggttggtgaaagagaagaaagggaagtgagag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26494518 tgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggttggtgaaagagaggaaagggaagtgagag 26494617  T
Q  219 aggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctccaactcactacacaattccacgtgtagtgacgga 318  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26494618 aggaagatttggagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctcctactcactacacaattccacgtgtagtgacgga 26494717  T
Q  319 ggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatcctacg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26494718 ggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattagatccaacggtttgggaggatcctacg 26494817  T
Q  419 gtgtttaagccagagaggtttctaaaagatgcaaaaaatagaaacgaatttgacgcatttgatgttaggggtataaaagagataaagatgatgccgtttg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494818 gtgtttaagccagagaggtttctaaaagatgcaaaaaatagaaacgaatttgacgcatttgatgttaggggtataaaagagataaagatgatgccgtttg 26494917  T
Q  519 gagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttcatt 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494918 gagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttcatt 26495017  T
Q  619 accaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatccactagaaaatcaaatttctctcaggaactagattcaacaa 718  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  26495018 accaggaagtaatgttgatttgacagaaaaacaggaatttacaatggtgatgaaatatccactagaagctcaaatttctctcaggaattagattcaacaa 26495117  T
Q  719 ttggagacattttataggacatgatcatgattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacacatttagata 818  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26495118 ttggagacattttataggacatgatcaggattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacacatttagata 26495217  T
Q  819 taaatgatacattgatgccatagagcaatgatacaaatatagcaatgtaaggttagtttacaacatcaatcaactatggtgtaaatatatgtgtatatct 918  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | |||    
T  26495218 taaatgacacattgatgccatagagcaatgatacaaatatagcaatgtatggttagtttacaacatcaatcaaccatggtgtaaatatatgtgtgtgtct 26495317  T
Q  919 gtg 921  Q
    |||    
T  26495318 gtg 26495320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 475 - 679
Target Start/End: Original strand, 26506901 - 26507105
Alignment:
Q  475 atttgatgttaggggtataaaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatac 574  Q
    |||||||||||  |||  ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||    
T  26506901 atttgatgttacaggtcaaaatgagataaagatgatgccatttggagcaggaaggaggatttgtcctgcctataacttggcaatgctccatgtagagtac 26507000  T
Q  575 tttgttgctaatttggttttgaactttgagtggaagacttcattaccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaat 674  Q
    |||||  | ||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  26507001 tttgtgacaaatttagtttggaactttgaatggaagacttcattaccagaaagtaatgttgatttgtcagaaaaacaggaatttactatggtgatgaaat 26507100  T
Q  675 atcca 679  Q
    |||||    
T  26507101 atcca 26507105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 26506462 - 26506825
Alignment:
Q  18 agttacctgaggagaaacggaagcttaacgaaggtgaagttgttgcactatgttccgagtttctcaccgcaggaactgacacaacttcaactacactaga 117  Q
    |||| |||||||||||||| |||||| | || | |||  ||||||| || ||||| ||||||||||| || ||||| || |||||||||||| || ||||    
T  26506462 agttgcctgaggagaaacgaaagcttgatgacgatgagcttgttgcgctgtgttcggagtttctcactgccggaacagatacaacttcaactgcattaga 26506561  T
Q  118 gtgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggttggtgaaagagaagaaagggaagtgaga 217  Q
    ||||||||||||||||||||| ||| ||||||| |||||||| |   |||| |||||||||| ||  ||  ||||||| ||||| ||||| ||||| | |    
T  26506562 gtgggttatggcgaatttggtcaaatacaaacatgtgcaacaaagaatagtcgaggaaattggagttgtaattggtgatagagaggaaagagaagtaaaa 26506661  T
Q  218 gaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctccaactcactacacaattccacgtgtagtgacgg 317  Q
    |||||||||||| | || || || ||| | ||||| |||||||| |||||||||||||| || |||||  ||||||||  |||||||| || |||||| |    
T  26506662 gaggaagatttggaaaagttaccttatcttaaggcagtgattttagaagggttaaggcgccaccctccttctcactacttaattccacatgcagtgaccg 26506761  T
Q  318 aggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcaga 381  Q
    ||||| |  |||| || |||||||||||||||||||||||||| || |||||||||||||||||    
T  26506762 aggatgtgatttttaacggttacttggtgcctaaaaatgggacagttaattttatggtggcaga 26506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 494 - 591
Target Start/End: Original strand, 41127308 - 41127405
Alignment:
Q  494 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggt 591  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||  ||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  41127308 aaagagataaagatgatgccgtttggagttgggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggt 41127405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 494 - 609
Target Start/End: Complemental strand, 15176402 - 15176287
Alignment:
Q  494 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 593  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||   || ||| || | || || |||||||||||||| ||||| ||||    
T  15176402 aaagagataaagatgatgccatttggagcagggaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaattttgttt 15176303  T
Q  594 tgaactttgagtggaa 609  Q
    |||| |||||||||||    
T  15176302 tgaattttgagtggaa 15176287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 15176660 - 15176593
Alignment:
Q  215 agagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcc 282  Q
    ||||| ||||||||| | ||| |||||||| | || ||||| |||||||||||| |||||||||||||    
T  15176660 agagaagaagatttgaaaaaaatgccatatcttaaagctgtaattttggaagggctaaggcgtcatcc 15176593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 326 - 439
Target Start/End: Original strand, 2327134 - 2327247
Alignment:
Q  326 gttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatcctacggtgttta 425  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| || || ||  ||||    |||||||||||||| | || |||||    
T  2327134 gttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagttta 2327233  T
Q  426 agccagagaggttt 439  Q
    ||||||| ||||||    
T  2327234 agccagaaaggttt 2327247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 494 - 610
Target Start/End: Original strand, 2330996 - 2331112
Alignment:
Q  494 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 593  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||||  ||||| || ||  |||| ||||| ||||| ||||| |||||||||||||    
T  2330996 aaagagataaagatgatgccatttggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggttt 2331095  T
Q  594 tgaactttgagtggaag 610  Q
     ||| || || ||||||    
T  2331096 ggaatttcgattggaag 2331112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 610
Target Start/End: Original strand, 2303729 - 2303842
Alignment:
Q  497 gagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttga 596  Q
    |||||||||||||||||||||| ||| |  ||||| |||||||||||   ||| || ||  |||||||||||||||| ||||| ||||||||||||| ||    
T  2303729 gagataaagatgatgccgtttgaagctgaaaggagaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttgga 2303828  T
Q  597 actttgagtggaag 610  Q
    | || || ||||||    
T  2303829 atttcgattggaag 2303842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 494 - 610
Target Start/End: Original strand, 2327281 - 2327397
Alignment:
Q  494 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 593  Q
    |||||||| |||||||||||||||||||| || ||||| |||||||| |  ||||| || ||  | |||||||| ||||| ||||| |||||||||||||    
T  2327281 aaagagatcaagatgatgccgtttggagctggtaggagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggttt 2327380  T
Q  594 tgaactttgagtggaag 610  Q
     ||| || || ||||||    
T  2327381 ggaatttcgattggaag 2327397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 2330840 - 2330904
Alignment:
Q  317 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcaga 381  Q
    |||||| | |||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||    
T  2330840 gaggatgtggttttgaatggttatttggtgcctaaagatgggacggtgaattttatggttgcaga 2330904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 335 - 439
Target Start/End: Original strand, 2351164 - 2351268
Alignment:
Q  335 ggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatcctacggtgtttaagccagaga 434  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| || || |   ||||    |||||||||||||| | || ||||||||||||||    
T  2351164 ggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaga 2351263  T
Q  435 ggttt 439  Q
    |||||    
T  2351264 ggttt 2351268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 610
Target Start/End: Original strand, 2310444 - 2310560
Alignment:
Q  494 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 593  Q
    ||||||||||||||||||||||||||||| || || || |||||||| |    ||| || ||  |||||||||| ||||| ||||| |||||||||||||    
T  2310444 aaagagataaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggttt 2310543  T
Q  594 tgaactttgagtggaag 610  Q
     ||| || || ||||||    
T  2310544 ggaatttcgattggaag 2310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 494 - 593
Target Start/End: Original strand, 2321428 - 2321527
Alignment:
Q  494 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 593  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||| |    ||| || ||  |||||||||| ||||| ||||| ||||| |||||||    
T  2321428 aaagagataaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt 2321527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 439
Target Start/End: Original strand, 2303570 - 2303692
Alignment:
Q  317 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatccta 416  Q
    |||||| | |||||||| ||||| |||||||||||||||||||| |||||||| ||| |||| || || || |   ||||    |||||||||||||| |    
T  2303570 gaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctggcggagatggggtgggatcctcgtgtttgggaggatccaa 2303669  T
Q  417 cggtgtttaagccagagaggttt 439  Q
     || |||||||||||| ||||||    
T  2303670 tggagtttaagccagaaaggttt 2303692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 494 - 610
Target Start/End: Original strand, 2294113 - 2294229
Alignment:
Q  494 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 593  Q
    ||||||||||||||||||||||||||||| || || || |||||||| |    ||| || ||  |||||||||| ||||| ||||| ||||| |||||||    
T  2294113 aaagagataaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt 2294212  T
Q  594 tgaactttgagtggaag 610  Q
     ||| || || ||||||    
T  2294213 ggaatttcgattggaag 2294229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 2321272 - 2321324
Alignment:
Q  317 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattt 369  Q
    |||||| | |||||||| ||||| |||||||||||||||||||| ||||||||    
T  2321272 gaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaattt 2321324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 2293848 - 2293922
Alignment:
Q  208 ggaagtgagagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcc 282  Q
    |||||||| ||||||||| ||| ||||| | |  |||||||||  |||| ||||||||||||| |||||||||||    
T  2293848 ggaagtgaaagaggaagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatcc 2293922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 679
Target Start/End: Original strand, 2294246 - 2294295
Alignment:
Q  630 atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca 679  Q
    ||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  2294246 atgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatcca 2294295  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 679
Target Start/End: Original strand, 2310577 - 2310626
Alignment:
Q  630 atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca 679  Q
    ||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  2310577 atgttgatttgacggaaatacaagaattcactatggtgatgaaaaatcca 2310626  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 494 - 540
Target Start/End: Original strand, 55017087 - 55017133
Alignment:
Q  494 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcc 540  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||    
T  55017087 aaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc 55017133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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