View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16257_high_15 (Length: 309)
Name: NF16257_high_15
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 43107058 - 43107338
Alignment:
| Q |
11 |
cagagataatttttggatcaacaatgttccctttaccaatattaggnnnnnnnatgatatgaagcataactttctcaaactcttctccatctctccaacc |
110 |
Q |
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| T |
43107058 |
cagagataatttttggatcaacagtgttccctttaccaatattaggttttttgatgatatgaagcataacattctcaaactcttccccatctctccaacc |
43107157 |
T |
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| Q |
111 |
atgtagatgtgcctttatgtctttagaatttttagagacaaaatcaaacaattgaaagttcatctaggcatgagataatcaatcactctctttgaggttt |
210 |
Q |
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| T |
43107158 |
atgtacatgtgcctttatgtctttagaatttttagagacaaaatcaaacaattgaaagttcatctaggcatgagataatcaatcactctctttgaggttt |
43107257 |
T |
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| Q |
211 |
aaactaggacaaaagtcattatttccatctcctaggtagatgaatttcttctttccttcatcatcaagtgaattttggaaa |
291 |
Q |
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| T |
43107258 |
aaactaggacaaaagtcattatttccatcttctaggtagatgaatttcttctttccttcatcatcaagtgaattttggaaa |
43107338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 43103837 - 43104108
Alignment:
| Q |
13 |
gagataatttttggatcaacaatgttccctttaccaatattaggnnnnnnnatgatatgaagcataactttctcaaactcttctccatctctccaaccat |
112 |
Q |
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| T |
43103837 |
gagataatttttggaccaacaatgttccctttaccaatattagctttgttgataatatgaagcagaacattctcaagctcctctccatctctccaaccat |
43103936 |
T |
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| Q |
113 |
gtagatgtgcctttatgtctttagaatttttagagacaaaatcaaacaattgaaagttca-tctaggcatgagataatcaatcactctctttgaggttta |
211 |
Q |
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| T |
43103937 |
gtacatgtgccttaatgtcatttgaatttttagatactaaatcactcaatgcaaagttcattctaggcatcaaat----aatcactctctttgagcttta |
43104032 |
T |
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| Q |
212 |
aactaggacaaaagtcattatttccatctcctaggtagatgaatttcttctttccttcatcatcaagtgaattttg |
287 |
Q |
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| T |
43104033 |
gactagggcaaaagtctccacttccatctcctaagtagatgattttcttctttccttcatcatcaagtgaattttg |
43104108 |
T |
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