View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16257_high_20 (Length: 264)
Name: NF16257_high_20
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26772381 - 26772626
Alignment:
| Q |
1 |
gcataagtgtgatgtagaattgtgggagccgcttaatagtagttatggaaccaagtttgagtttcatacaaacactaagaacnnnnnnnntctgaattgt |
100 |
Q |
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| T |
26772381 |
gcataagtgtgatgtagaattgtgggagccgcttaatagtagttatggaaccaagtttgagtttcatacaaacactaagaacaaaaaaaatctcaattgt |
26772480 |
T |
|
| Q |
101 |
ttttctcagatagtatatgccaaaaggaactaattgctatctaactccataactaattaatattatctatcagataaacaagttggtaaacaaatatggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26772481 |
ttttctcagatagtatatgccaaaaggaactaattgctatctaactccataactaattaatattatctatcagataaacaagttggtaaacaaatatggt |
26772580 |
T |
|
| Q |
201 |
aatgtaaccaaaaaacaaatgtggtcagcaaactacctaatacaaa |
246 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26772581 |
aatgttaccaaaaaacaaatgtggtcagcaaactacctaatacaaa |
26772626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 29355652 - 29355581
Alignment:
| Q |
2 |
cataagtgtgatgtagaattgtgggagccgcttaatagtagttatggaaccaagtttgagtttcatacaaac |
73 |
Q |
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|||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29355652 |
cataagtgtgatgtgttatagtgggagccaattaatagtagttatggaaccaagttcgagtttcatacaaac |
29355581 |
T |
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