View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16257_high_5 (Length: 556)
Name: NF16257_high_5
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 271 - 537
Target Start/End: Original strand, 40282890 - 40283156
Alignment:
| Q |
271 |
aagacatacatattatgaagataagataatattttctatatatttgatggaagaactgaacagtaaactataaagtaaattaattaattattaagatagt |
370 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40282890 |
aagacatgcatattatgaagataagataatattttctatatatttgatggaagaactgaacagtaaactataaagtaaattaattaattattaagatagt |
40282989 |
T |
|
| Q |
371 |
cataaagcaaatctatgtgtatattcaggcaccctagaccaattgtttgttattcctaatcatcgttggtgccttgtgagagacaccattactcagcacc |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40282990 |
cataaagcaaatctatgtgtatattcaggcaccctagaccaattgtttgtcattcctaatcatcgttggtgccttgtgagagacaccattactcagcacc |
40283089 |
T |
|
| Q |
471 |
atgtgttatattcacttcctctgctatcacaaatagaacagtatttttaaagtagttagcatgaaat |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40283090 |
atgtgttatattcacttcctctgctatcacaaatagaacagtatttttaaagtagttaacatgaaat |
40283156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 40282652 - 40282896
Alignment:
| Q |
11 |
tcgaagaatatttaattaatttgaagatatgaagatgaattcaacttagatttccaatgagcatatacctaaacatatgttcagttaagaagttactagt |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40282652 |
tcgaacaatatttaattaatttgaagatatgaagatgaattcaacttagatttccaatgagcatatacctaaacatatgttcagttaagaagttactagt |
40282751 |
T |
|
| Q |
111 |
ttatcaactaatcaaatgacaagtagtaacaaatcattag--tatataatcatcatctccctgcaataaaggtaggtgacaccgaccaggcaaccacttt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40282752 |
ttatcaactaatcaaatgacaagtagtaacaaatcattagtatatataatcatcatctccctgcaataaaggtaggtgacaccgaccaagcaaccacttt |
40282851 |
T |
|
| Q |
209 |
gctaccttaacgttaaattgtttatgcaaacaaattgaaaaacat |
253 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
40282852 |
gctaccttaacgttgaattgtttatataaacaaattgaaagacat |
40282896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University