View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16257_high_7 (Length: 481)

Name: NF16257_high_7
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16257_high_7
NF16257_high_7
[»] chr5 (3 HSPs)
chr5 (18-343)||(1122733-1123058)
chr5 (353-419)||(17219042-17219108)
chr5 (354-398)||(17219768-17219812)
[»] chr2 (10 HSPs)
chr2 (193-336)||(8174374-8174517)
chr2 (342-419)||(43805725-43805803)
chr2 (352-396)||(30392066-30392110)
chr2 (353-396)||(38997045-38997088)
chr2 (354-388)||(30391461-30391495)
chr2 (413-454)||(39738809-39738850)
chr2 (341-396)||(23175271-23175326)
chr2 (341-396)||(23586528-23586583)
chr2 (353-441)||(29720308-29720396)
chr2 (355-419)||(36779942-36780006)
[»] chr1 (5 HSPs)
chr1 (341-466)||(51308487-51308612)
chr1 (353-471)||(52668160-52668276)
chr1 (351-396)||(38599887-38599932)
chr1 (341-420)||(45817281-45817361)
chr1 (352-396)||(46315403-46315447)
[»] chr8 (10 HSPs)
chr8 (351-472)||(40317145-40317266)
chr8 (380-473)||(40317762-40317855)
chr8 (398-471)||(39862278-39862351)
chr8 (341-441)||(35020127-35020228)
chr8 (351-419)||(1274493-1274561)
chr8 (354-398)||(11112347-11112391)
chr8 (351-416)||(22475019-22475084)
chr8 (351-419)||(28930924-28930992)
chr8 (351-419)||(28931475-28931543)
chr8 (351-419)||(37810323-37810391)
[»] chr6 (7 HSPs)
chr6 (353-452)||(13355962-13356061)
chr6 (351-398)||(29200705-29200752)
chr6 (341-396)||(8172872-8172926)
chr6 (412-454)||(11434619-11434661)
chr6 (341-429)||(28295433-28295522)
chr6 (341-429)||(28516551-28516640)
chr6 (412-452)||(34243514-34243554)
[»] chr3 (6 HSPs)
chr3 (341-431)||(35650812-35650902)
chr3 (341-396)||(571696-571750)
chr3 (351-396)||(8351319-8351364)
chr3 (342-400)||(23709524-23709582)
chr3 (342-400)||(23727980-23728038)
chr3 (342-400)||(23746436-23746494)
[»] chr4 (3 HSPs)
chr4 (351-396)||(6114997-6115042)
chr4 (341-420)||(19330201-19330279)
chr4 (351-396)||(6115055-6115100)
[»] chr7 (1 HSPs)
chr7 (351-396)||(27819230-27819275)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 1123058 - 1122733
Alignment:
Q  18 ctagttacaagtaataatattaaattgagtatattctagtaaaaaggtcatgtgacactttctttttccgatttgaagacacaatgacacagtgatgtct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1123058 ctagttacaagtaataatattaaattgagtatattctagtaaaaaggtcacgtgacactttctttttctgatttgaagacacaatgacacagtgatgtct 1122959  T
Q  118 cagtaaagtaatgtgtatatccagacaaaaaatactgtaagcatatgcaggcgggttcgggtaccgatggattcagaaattaatccgcacctgcccgttt 217  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  1122958 cagtaaagtaacgtgtatatccagacaaaaaatactgtaagcatatgcgggcgggttccggtaccgatggattcagaaattaatccgcacctgcctgttt 1122859  T
Q  218 caaaccgtgttaaaccgattctgacagtctgctcacccgattgaccgacccgaaccgcccgtttgatcaaaaattaactcggttattgcggattccggcg 317  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  1122858 caaatcgggttaaaccgattctgacagtctgctcacccgattgaccgacccgaaccgcccgtttgatcaaaaattgactcggttattgcgggttccggcg 1122759  T
Q  318 ggccacgggttcttgtccacccctat 343  Q
    ||||||||||||||||||||| ||||    
T  1122758 ggccacgggttcttgtccacctctat 1122733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 17219042 - 17219108
Alignment:
Q  353 catatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaa 419  Q
    ||||||||||||||||||   ||||||||||||||||||||||||| ||| |||| || ||||||||    
T  17219042 catatcaagtgagaatgagtattttatgtgagaatggtaggaatgaatttgagccattagattaaaa 17219108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 17219812 - 17219768
Alignment:
Q  354 atatcaagtgagaatgatatttttatgtgagaatggtaggaatga 398  Q
    |||||||||||||||||   |||||||||||||||||||||||||    
T  17219812 atatcaagtgagaatgagtattttatgtgagaatggtaggaatga 17219768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 6e-66; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 193 - 336
Target Start/End: Complemental strand, 8174517 - 8174374
Alignment:
Q  193 gaaattaatccgcacctgcccgtttcaaaccgtgttaaaccgattctgacagtctgctcacccgattgaccgacccgaaccgcccgtttgatcaaaaatt 292  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8174517 gaaattaatctgcacctgcccgtttcaaaccatgttaaaccgattctgacagtcggctcacccgattgaccgacccgaaccgcccgtttgatcaaaaatt 8174418  T
Q  293 aactcggttattgcggattccggcgggccacgggttcttgtcca 336  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  8174417 gactcggttattgcggattccggcgggccacgggttcttgtcca 8174374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 43805803 - 43805725
Alignment:
Q  342 atatatagtggc-atatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaa 419  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||| | || |||| |||  |||| ||||||||||||    
T  43805803 atatatagtggccatatcaactgagaatgataattttatgtgagaacgataagaataattaacagcttttggattaaaa 43805725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 30392110 - 30392066
Alignment:
Q  352 gcatatcaagtgagaatgatatttttatgtgagaatggtaggaat 396  Q
    |||||||| ||||||||||||||| |||||||||||| |||||||    
T  30392110 gcatatcaggtgagaatgatatttatatgtgagaatgataggaat 30392066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 38997088 - 38997045
Alignment:
Q  353 catatcaagtgagaatgatatttttatgtgagaatggtaggaat 396  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||    
T  38997088 catatcaagtgagaatgatatgtttacatgagaatggtaggaat 38997045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 388
Target Start/End: Original strand, 30391461 - 30391495
Alignment:
Q  354 atatcaagtgagaatgatatttttatgtgagaatg 388  Q
    |||||||||||||||||||||| ||||||||||||    
T  30391461 atatcaagtgagaatgatatttatatgtgagaatg 30391495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 39738850 - 39738809
Alignment:
Q  413 attaaaaactaatggctgagatttaaatgctctattaaaaca 454  Q
    ||||||| ||||||| |||||||||||||||| |||||||||    
T  39738850 attaaaagctaatggttgagatttaaatgctcaattaaaaca 39738809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 23175326 - 23175271
Alignment:
Q  341 tatatatagtggcatatcaagtgagaat-gatatttttatgtgagaatggtaggaat 396  Q
    ||||||||| |||||||||||||||||| |||| | ||||||||||||| |||||||    
T  23175326 tatatataggggcatatcaagtgagaatggata-tgttatgtgagaatgataggaat 23175271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 23586583 - 23586528
Alignment:
Q  341 tatatatagtggcatatcaagtgagaat-gatatttttatgtgagaatggtaggaat 396  Q
    ||||||||| |||||||||||||||||| |||| | ||||||||||||| |||||||    
T  23586583 tatatataggggcatatcaagtgagaatggata-tgttatgtgagaatgataggaat 23586528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 441
Target Start/End: Original strand, 29720308 - 29720396
Alignment:
Q  353 catatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaactaatggctgagatttaaatg 441  Q
    |||||||  |||||||| ||||||||||||||||||  || |  |||||||||||||  |||||  |  ||| ||||||||||||||||    
T  29720308 catatcatatgagaatggtatttttatgtgagaatgtgagaatggattttcagccttcagattatgatttaacggctgagatttaaatg 29720396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 36779942 - 36780006
Alignment:
Q  355 tatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaa 419  Q
    ||||| |||||||||||| ||||||||||||||   || | | |||| |||||||||||||||||    
T  36779942 tatcatgtgagaatgataattttatgtgagaatatgagaattaatttccagcctttggattaaaa 36780006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 341 - 466
Target Start/End: Complemental strand, 51308612 - 51308487
Alignment:
Q  341 tatatatagtggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaactaatggctgagatttaaat 440  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51308612 tatatatataggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagtctttggattaaaaactaatggctgagatttaaat 51308513  T
Q  441 gctctattaaaacaattatttgcctc 466  Q
    ||||||||||||||||||||||||||    
T  51308512 gctctattaaaacaattatttgcctc 51308487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 353 - 471
Target Start/End: Complemental strand, 52668276 - 52668160
Alignment:
Q  353 catatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaactaatggctgagatttaaatgctctattaaaa 452  Q
    |||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  52668276 catatcaagtgagaatgatattttaatgcga--atggtaggaatgattttcagccttgagataaaaaactaatggctgagatttaaatgctctattaaaa 52668179  T
Q  453 caattatttgcctcttctt 471  Q
     ||| |  |||||||||||    
T  52668178 taatcacgtgcctcttctt 52668160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 38599932 - 38599887
Alignment:
Q  351 ggcatatcaagtgagaatgatatttttatgtgagaatggtaggaat 396  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  38599932 ggcatatcaagtgagaatgatatgtttatatgagaatggtaagaat 38599887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 45817281 - 45817361
Alignment:
Q  341 tatatatagtgg-catatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaa 420  Q
    ||||||||| || ||||||| ||||||||||| ||| |||||||||||||||||||  ||| ||| || || |||||||||    
T  45817281 tatatataggggacatatcatgtgagaatgatttttatatgtgagaatggtaggaacaattatcaaccattagattaaaaa 45817361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 46315447 - 46315403
Alignment:
Q  352 gcatatcaagtgagaatgatatttttatgtgagaatggtaggaat 396  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||    
T  46315447 gcatatcacatgagaatgatatttatatgtgagaatggtaggaat 46315403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 351 - 472
Target Start/End: Original strand, 40317145 - 40317266
Alignment:
Q  351 ggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaactaatggctgagatttaaatgctctattaa 450  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  40317145 ggcatatcaagtgagaatgatatttttatgtgagaatggtaagaataattttcagcctttgaattaaaaactaatggctaagatttaaatgctctattaa 40317244  T
Q  451 aacaattatttgcctcttcttc 472  Q
    | |||  || ||||||||||||    
T  40317245 atcaaccatgtgcctcttcttc 40317266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 380 - 473
Target Start/End: Complemental strand, 40317855 - 40317762
Alignment:
Q  380 gtgagaatggtaggaatgattttcagcctttggattaaaaactaatggctgagatttaaatgctctattaaaacaattatttgcctcttcttct 473  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40317855 gtgagaatggtaggaaagattttcagcctttggattaaaaattaatggttgagatttaaatgctctattaaaacaattatttgcctcttcttct 40317762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 39862351 - 39862278
Alignment:
Q  398 attttcagcctttggattaaaaactaatggctgagatttaaatgctctattaaaacaattatttgcctcttctt 471  Q
    |||||||||||||||||| | |  |||||||||||||| ||||||| ||||||||||| ||| |||||||||||    
T  39862351 attttcagcctttggattcacatttaatggctgagattaaaatgctttattaaaacaactatgtgcctcttctt 39862278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 441
Target Start/End: Original strand, 35020127 - 35020228
Alignment:
Q  341 tatatatagtgg-catatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaactaatggctgagatttaaa 439  Q
    ||||||||| || |||||||  |||||||||||||||||||||||||||  || |  |||||||||||||  |||||  |  ||| ||||||||||||||    
T  35020127 tatatatagaggacatatcatatgagaatgatatttttatgtgagaatgtgagaatggattttcagccttcagattatgatttaacggctgagatttaaa 35020226  T
Q  440 tg 441  Q
    ||    
T  35020227 tg 35020228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 1274561 - 1274493
Alignment:
Q  351 ggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaa 419  Q
    |||||||||  ||||||||| |||| |||  ||||||||||||||||||| | ||||||| ||||||||    
T  1274561 ggcatatcacatgagaatgacatttatatacgagaatggtaggaatgattgtgagcctttagattaaaa 1274493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 11112391 - 11112347
Alignment:
Q  354 atatcaagtgagaatgatatttttatgtgagaatggtaggaatga 398  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||    
T  11112391 atatcaagtgagaatgatatttgtatgtgagaatgaaaggaatga 11112347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 22475019 - 22475084
Alignment:
Q  351 ggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggatta 416  Q
    ||||||||| |||||||||| |   ||||||||||||| ||||||||||| |  ||||||||||||    
T  22475019 ggcatatcatgtgagaatgacaaagttatgtgagaatgataggaatgattatgggcctttggatta 22475084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 28930924 - 28930992
Alignment:
Q  351 ggcatatcaagtgagaat-gatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaa 419  Q
    |||||||||||||||||| ||||   ||||||||||||| ||||||| ||| ||| ||||||||||||||    
T  28930924 ggcatatcaagtgagaatggata-aattatgtgagaatgataggaataattatcaacctttggattaaaa 28930992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 28931543 - 28931475
Alignment:
Q  351 ggcatatcaagtgagaat-gatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaa 419  Q
    |||||||||||||||||| ||||   ||||||||||||| ||||||| ||| ||| ||||||||||||||    
T  28931543 ggcatatcaagtgagaatggata-aattatgtgagaatgataggaataattatcaacctttggattaaaa 28931475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 37810323 - 37810391
Alignment:
Q  351 ggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaa 419  Q
    |||||||||  |||||||||||||| || ||||||||| || |||||| || ||||| || ||||||||    
T  37810323 ggcatatcacatgagaatgatatttataggtgagaatgatatgaatgaattacagccattagattaaaa 37810391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 353 - 452
Target Start/End: Complemental strand, 13356061 - 13355962
Alignment:
Q  353 catatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaactaatggctgagatttaaatgctctattaaaa 452  Q
    ||||||||||||||||||   | |||| |||||||| ||||||||||||| | || || ||||||||| ||| |||||| |||||| |||||||||||||    
T  13356061 catatcaagtgagaatgaacatcttatttgagaatgataggaatgattttgaaccattagattaaaaattaaaggctgatatttaattgctctattaaaa 13355962  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 29200705 - 29200752
Alignment:
Q  351 ggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatga 398  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||    
T  29200705 ggcatatcaagtgagaatgagtattttatgtgagaatggtaggaatga 29200752  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 8172926 - 8172872
Alignment:
Q  341 tatatatagtggcatatcaagtgagaatgatatttttatgtgagaatggtaggaat 396  Q
    ||||||||| |||||||||||||||||| | || |||||||||||||| |||||||    
T  8172926 tatatatag-ggcatatcaagtgagaataacatatttatgtgagaatgataggaat 8172872  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 454
Target Start/End: Original strand, 11434619 - 11434661
Alignment:
Q  412 gattaaaaactaatggctgagatttaaatgctctattaaaaca 454  Q
    |||||||| ||||||| |||||||||||||||| |||||||||    
T  11434619 gattaaaagctaatggttgagatttaaatgctcaattaaaaca 11434661  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 28295522 - 28295433
Alignment:
Q  341 tatatatagtgg-catatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaactaatggct 429  Q
    ||||||||| || ||||||||||||||||||   ||||| |||||||| |||||||| ||||| ||||  | ||| ||||| ||||||||    
T  28295522 tatatataggggacatatcaagtgagaatgagtattttaggtgagaatagtaggaataattttgagccactagatcaaaaattaatggct 28295433  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 429
Target Start/End: Original strand, 28516551 - 28516640
Alignment:
Q  341 tatatatagtgg-catatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaactaatggct 429  Q
    ||||||||| || ||||||||||||||||||   ||||| |||||||| |||||||| ||||| ||||  | ||| ||||| ||||||||    
T  28516551 tatatataggggacatatcaagtgagaatgagtattttaggtgagaatagtaggaataattttgagccactagatcaaaaattaatggct 28516640  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 34243514 - 34243554
Alignment:
Q  412 gattaaaaactaatggctgagatttaaatgctctattaaaa 452  Q
    ||||||||  ||||||||||||||||||||||| |||||||    
T  34243514 gattaaaagttaatggctgagatttaaatgctccattaaaa 34243554  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 431
Target Start/End: Original strand, 35650812 - 35650902
Alignment:
Q  341 tatatatagtggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaactaatggctga 431  Q
    ||||||| | |||||||||||||||||||    | ||||||||||||| ||||||||||||| | || || ||||||||||||| ||||||    
T  35650812 tatatatgggggcatatcaagtgagaatggacatcttatgtgagaatgataggaatgattttgaaccattagattaaaaactaacggctga 35650902  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 571750 - 571696
Alignment:
Q  341 tatatatagtggcatatcaagtgagaatgatatttttatgtgagaatggtaggaat 396  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  571750 tatatatag-ggcatatcaagtgagaatgatatgtttatatgagaatggtaagaat 571696  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 8351319 - 8351364
Alignment:
Q  351 ggcatatcaagtgagaatgatatttttatgtgagaatggtaggaat 396  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  8351319 ggcatatcaagtgagaatgatatgtttatatgagaatggtaagaat 8351364  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 23709524 - 23709582
Alignment:
Q  342 atatatagtggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgatt 400  Q
    |||||||| |||||||||  ||||||||||| || ||| |||||||| |||||||||||    
T  23709524 atatataggggcatatcacatgagaatgatagttatatatgagaatgataggaatgatt 23709582  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 23727980 - 23728038
Alignment:
Q  342 atatatagtggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgatt 400  Q
    |||||||| |||||||||  ||||||||||| || ||| |||||||| |||||||||||    
T  23727980 atatataggggcatatcacatgagaatgatagttatatatgagaatgataggaatgatt 23728038  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 23746436 - 23746494
Alignment:
Q  342 atatatagtggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgatt 400  Q
    |||||||| |||||||||  ||||||||||| || ||| |||||||| |||||||||||    
T  23746436 atatataggggcatatcacatgagaatgatagttatatatgagaatgataggaatgatt 23746494  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 6115042 - 6114997
Alignment:
Q  351 ggcatatcaagtgagaatgatatttttatgtgagaatggtaggaat 396  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||    
T  6115042 ggcatatcaagtgagaataacatttatatgtgagaatggtaggaat 6114997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 420
Target Start/End: Complemental strand, 19330279 - 19330201
Alignment:
Q  341 tatatatagtggcatatcaagtgagaatgatatttttatgtgagaatggtaggaatgattttcagcctttggattaaaaa 420  Q
    ||||||||| ||||||||| ||||||||||  ||| |||||||||||||||||||  ||| ||| || || |||||||||    
T  19330279 tatatatag-ggcatatcatgtgagaatgacttttatatgtgagaatggtaggaacaattatcaaccattagattaaaaa 19330201  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 6115055 - 6115100
Alignment:
Q  351 ggcatatcaagtgagaatgatatttttatgtgagaatggtaggaat 396  Q
    |||||||||||||||||| | |||| ||||| ||||||||||||||    
T  6115055 ggcatatcaagtgagaataacatttatatgtaagaatggtaggaat 6115100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 27819275 - 27819230
Alignment:
Q  351 ggcatatcaagtgagaatgatatttttatgtgagaatggtaggaat 396  Q
    ||||||||||||||||||| | ||| ||||||||||| ||||||||    
T  27819275 ggcatatcaagtgagaatgttttttatatgtgagaatagtaggaat 27819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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