View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16257_low_10 (Length: 425)
Name: NF16257_low_10
Description: NF16257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16257_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 50424000 - 50424407
Alignment:
| Q |
1 |
gaaatatgttaatgctttattatctgtattatgcatttcaccgcaatctaaatggtagggtgctcgcgccattacacgatttgagaggagtgaaataagc |
100 |
Q |
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| T |
50424000 |
gaaatatgttaatgctttattatctgtattatgcatttcaccgcaatctaaatggtagggtgctcgcaccattacacgatttgagaggagtgaaataagt |
50424099 |
T |
|
| Q |
101 |
agaaacaacatcagctgaagctgaaacaacggtagcagcaacaacaacagaaattcatacattagcagtagcagacacattatgcgtatgcagtgcagtg |
200 |
Q |
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| T |
50424100 |
agaaacaacatcagctgaagctgaaacaacggtagcagcaacaacaacagaaattcatacattagcagtagcagacacattatgcgtatgcagtgcagtg |
50424199 |
T |
|
| Q |
201 |
tcgatgcaagcttttttcgtggacagaattacacacgcgttggttgttgtatttgaggcataaaatgtatgtttgttcgagcatttaaaggttggtctca |
300 |
Q |
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| T |
50424200 |
tcgatgcaagcttttttcgtggacagaatcacacacgcgttggttgttgtatttgaggcataaaatgtatgtttgttcgagcatttaaaggttggtctca |
50424299 |
T |
|
| Q |
301 |
gcataacatgttggtgcatgagggagaagctattacgttgttgaatgccatgaattgggtgcaaaaaatgggattgcaacgtgtgatgtttctaagtgac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50424300 |
gcataacatgttggtgcatgagggagaagctattacgttgttgaatgccatgaattgggtgcaaaaaatgggattgcaacgtgtgatgtttccaagtgac |
50424399 |
T |
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| Q |
401 |
tcataggt |
408 |
Q |
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|||||||| |
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| T |
50424400 |
tcataggt |
50424407 |
T |
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